Sb07g020090 (Sorghum bicolor)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Sb07g020090 T005039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.851 0.960
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.838 0.940
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.838 0.940
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.722 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.722 0.860
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.685 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb07g020090.1 AP2 90 141

Links

Other AP2 family TFs
Other Sorghum bicolor TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK27085.1 Cannabis sativa PK27085.1 D 0.000
anac075 Arabidopsis thaliana AT4G29230 D 0.000
Cucsa.288680 Cucumis sativus Cucsa.288680 I 0.000
Si001527m.g Setaria italica Si001527m.g I 0.000
Cucsa.116800 Cucumis sativus Cucsa.116800 I 0.000
cassava44586.m1 Manihot esculenta cassava44586.m1 I 0.000
cassava11584.m1 Manihot esculenta cassava11584.m1 I 0.000
29912.m005354 Ricinus communis 29912.m005354 I 0.000
Pm027280 Prunus mume Pm027280 I 0.000
Cla017075 Citrullus lanatus Cla017075 I 0.000
Cla011431 Citrullus lanatus Cla011431 I 0.000
Ca_05913 Cicer arietinum Ca_05913 I 0.000
VIT_11s0016g02880 Vitis vinifera VIT_11s0016g02880 I 0.000
Traes_3DL_C686CE2E3 Triticum aestivum Traes_3DL_C686CE2E3 I 0.000
Traes_3AL_41AC2099E Triticum aestivum Traes_3AL_41AC2099E I 0.000
Traes_3AL_41AC2099E1 Triticum aestivum Traes_3AL_41AC2099E1 I 0.000
TCM_037747 Theobroma cacao TCM_037747 I 0.000
Solyc05g026180.1 Solanum lycopersicum Solyc05g026180.1 I 0.000
Gorai.009G028900 Gossypium raimondii Gorai.009G028900 I 0.000
Thhalv10024980m.g Eutrema salsugineum Thhalv10024980m.g I 0.000
SapurV1A.1259s0030 Salix purpurea SapurV1A.1259s0030 I 0.000
SapurV1A.0212s0190 Salix purpurea SapurV1A.0212s0190 I 0.000
Pavir.J13205 Panicum virgatum Pavir.J13205 I 0.000
Pavir.Eb00261 Panicum virgatum Pavir.Eb00261 I 0.000
orange1.1g012118m.g Citrus sinensis orange1.1g012118m.g I 0.000
MDP0000124509 Malus domestica MDP0000124509 I 0.000
Gorai.010G078900 Gossypium raimondii Gorai.010G078900 I 0.000
Aquca_001_00211 Aquilegia coerulea Aquca_001_00211 I 0.000
gene11344-v1.0-hybrid Fragaria vesca gene11344-v1.0-hybrid I 0.000
evm.TU.supercontig_78.40 Carica papaya evm.TU.supercontig_78.40 I 0.000
Eucgr.C00958 Eucalyptus grandis Eucgr.C00958 I 0.000
Ciclev10010579m.g Citrus clementina Ciclev10010579m.g I 0.000
Carubv10004602m.g Capsella rubella Carubv10004602m.g I 0.000
Cagra.0495s0057 Capsella grandiflora Cagra.0495s0057 I 0.000
Bostr.7867s0767 Boechera stricta Bostr.7867s0767 I 0.000
GLYMA07G15180 Glycine max GLYMA07G15180 I 0.000
Sb03g003170 Sorghum bicolor Sb03g003170 I 0.000
GSMUA_Achr7G09510_001 Musa acuminata GSMUA_Achr7G09510_001 I 0.000
GSMUA_Achr6G05480_001 Musa acuminata GSMUA_Achr6G05480_001 I 0.000
GSMUA_Achr4G30940_001 Musa acuminata GSMUA_Achr4G30940_001 I 0.000
GSMUA_Achr2G16590_001 Musa acuminata GSMUA_Achr2G16590_001 I 0.000
GRMZM2G166721 Zea mays GRMZM2G166721 I 0.000
GRMZM2G112681 Zea mays GRMZM2G112681 I 0.000
GLYMA08G03590 Glycine max GLYMA08G03590 I 0.000
GSMUA_AchrUn_randomG28610_001 Musa acuminata GSMUA_AchrUn_randomG28610_001 I 0.000
GLYMA05G36031 Glycine max GLYMA05G36031 I 0.000
GLYMA01G00880 Glycine max GLYMA01G00880 I 0.000
anac075 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001013 I 0.000
Bra024152 Brassica rapa Bra024152 I 0.000
Bra011090 Brassica rapa Bra011090 I 0.000
Bo7g113660 Brassica oleracea Bo7g113660 I 0.000
Bo1g016630 Brassica oleracea Bo1g016630 I 0.000
BGIOSGA002220 Oryza indica BGIOSGA002220 I 0.000
ONIVA01G06690 Oryza nivara ONIVA01G06690 I 0.000
POPTR_0006s15740 Populus trichocarpa POPTR_0006s15740 I 0.000
PGSC0003DMG400016896 Solanum tuberosum PGSC0003DMG400016896 I 0.000
OS01G0191300 Oryza sativa OS01G0191300 I 0.000
ORUFI01G06380 Oryza rufipogon ORUFI01G06380 I 0.000
ORGLA01G0055000 Oryza glaberrima ORGLA01G0055000 I 0.000
OPUNC01G05680 Oryza punctata OPUNC01G05680 I 0.000
POPTR_0018s06790 Populus trichocarpa POPTR_0018s06790 I 0.000
LPERR01G05530 Leersia perrieri LPERR01G05530 I 0.000
OLONG_008708 Oryza longistaminata OLONG_008708 I 0.000
OGLUM01G06390 Oryza glumaepatula OGLUM01G06390 I 0.000
OBART01G05840 Oryza barthii OBART01G05840 I 0.000
OB01G15780 Oryza brachyantha OB01G15780 I 0.000
MTR_8g102240 Medicago truncatula MTR_8g102240 I 0.000
MLOC_66537 Hordeum vulgare MLOC_66537 I 0.000
PRUPE_ppa004775mg Prunus persica PRUPE_ppa004775mg I 0.000
Lus10012927.g Linum usitatissimum Lus10012927.g N 0.000
Lus10034999.g Linum usitatissimum Lus10034999.g N 0.000
mgf019352m Mimulus guttatus mgf019352m N 0.000