CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10013925m.g *(Capsella rubella)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Carubv10013925m.g	T007878_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.860	0.980
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.822	0.880
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.815	0.860
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.781	0.880
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.781	0.880
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.778	0.800
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.778	0.800
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.778	0.800
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.775	0.780
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.748	0.720
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.743	0.800
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.743	0.800
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.741	0.720
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.736	0.780
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.729	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.729	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.729	0.720
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.729	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.724	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.724	0.680
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.722	0.780
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.722	0.720
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.722	0.720
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.722	0.660
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.721	0.740
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.721	0.740
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.721	0.740
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.721	0.720
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.721	0.720
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.719	0.700
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.718	0.720
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.715	0.720
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.715	0.720
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.715	0.720
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.712	0.700
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.707	0.700
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.707	0.700
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.699	0.680
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.696	0.700
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.694	0.660
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.686	0.780
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.686	0.780
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.686	0.780
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.686	0.780
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.684	0.700
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.684	0.700
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.684	0.700
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.681	0.740
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.680	0.700
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.680	0.680
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.678	0.680
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.678	0.680
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.678	0.680
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.677	0.700
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.677	0.700
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.677	0.700
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.677	0.700
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.677	0.700
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10013925m	AP2	122	173	NQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGS

Links
Other AP2 family TFs
Other *Capsella rubella* TFs

1856 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
TBX1	Homo sapiens	ENSG00000184058	D
Tbx1	Mus musculus	ENSMUSG00000009097	D
CpipJ_CPIJ007784	Culex pipiens	CpipJ_CPIJ007784	I
AAEL018165	Aedes aegypti	AAEL018165	I
ACYPI001903	Acyrthosiphon pisum	ACYPI001903	I
BGIBMGA013132	Bombyx mori	BGIBMGA013132	I
CapteG226618	Capitella teleta	CapteG226618	I
CGI_10008753	Crassostrea gigas	CGI_10008753	I
CPIJ007784	Culex quinquefasciatus	CPIJ007784	I
DAPPUDRAFT_3881	Daphnia pulex	DAPPUDRAFT_3881	I
ENSACAG00000008549	Anolis carolinensis	ENSACAG00000008549	I
ENSAMEG00000001098	Ailuropoda melanoleuca	ENSAMEG00000001098	I
ENSAMXG00000020444	Astyanax mexicanus	ENSAMXG00000020444	I
TBX10	Bos taurus	ENSBTAG00000011816	I
TBX10	Canis familiaris	ENSCAFG00000011264	I
TBX1	Callithrix jacchus	ENSCJAG00000014591	I
ENSCSAG00000008726	Chlorocebus sabaeus	ENSCSAG00000008726	I
ENSCSAG00000011818	Chlorocebus sabaeus	ENSCSAG00000011818	I
ENSCSAVG00000000786	Ciona savignyi	ENSCSAVG00000000786	I
tbx1	Danio rerio	ENSDARG00000031891	I
TBX1	Dasypus novemcinctus	ENSDNOG00000035422	I
ENSFALG00000008041	Ficedula albicollis	ENSFALG00000008041	I
TBX10	Felis catus	ENSFCAG00000001760	I
ENSFCAG00000005446	Felis catus	ENSFCAG00000005446	I
TBX10	Homo sapiens	ENSG00000167800	I
tbx1	Gasterosteus aculeatus	ENSGACG00000013057	I
ENSGALG00000003599	Gallus gallus	ENSGALG00000003599	I
ENSGGOG00000009181	Gorilla gorilla	ENSGGOG00000009181	I
TBX10	Gorilla gorilla	ENSGGOG00000011961	I
ENSGMOG00000018613	Gadus morhua	ENSGMOG00000018613	I
ENSLACG00000004994	Latimeria chalumnae	ENSLACG00000004994	I
ENSLACG00000016333	Latimeria chalumnae	ENSLACG00000016333	I
TBX1	Loxodonta africana	ENSLAFG00000021555	I
ENSMEUG00000007568	Macropus eugenii	ENSMEUG00000007568	I
ENSMEUG00000011624	Macropus eugenii	ENSMEUG00000011624	I
ENSMGAG00000004357	Meleagris gallopavo	ENSMGAG00000004357	I
ENSMMUG00000018529	Macaca mulatta	ENSMMUG00000018529	I
TBX1	Monodelphis domestica	ENSMODG00000021176	I
TBX10	Monodelphis domestica	ENSMODG00000021334	I
ENSMPUG00000003900	Mustela putorius furo	ENSMPUG00000003900	I
ENSMPUG00000004076	Mustela putorius furo	ENSMPUG00000004076	I
Tbx10	Mus musculus	ENSMUSG00000037477	I
ENSOARG00000013751	Ovis aries	ENSOARG00000013751	I
TBX10	Otolemur garnettii	ENSOGAG00000000784	I
TBX1	Otolemur garnettii	ENSOGAG00000003596	I
ENSONIG00000015827	Oreochromis niloticus	ENSONIG00000015827	I
tbx1	Oryzias latipes	ENSORLG00000015256	I
ENSPANG00000006501	Papio anubis	ENSPANG00000006501	I
ENSPANG00000015763	Papio anubis	ENSPANG00000015763	I
TBX10	Procavia capensis	ENSPCAG00000009585	I
TBX1	Procavia capensis	ENSPCAG00000010176	I
ENSPFOG00000007309	Poecilia formosa	ENSPFOG00000007309	I
ENSPFOG00000009540	Poecilia formosa	ENSPFOG00000009540	I
ENSPFOG00000009621	Poecilia formosa	ENSPFOG00000009621	I
TBX10	Pan troglodytes	ENSPTRG00000003972	I
TBX10	Pteropus vampyrus	ENSPVAG00000008592	I
Tbx1	Rattus norvegicus	ENSRNOG00000001892	I
Tbx10	Rattus norvegicus	ENSRNOG00000017944	I
ENSSTOG00000004505	Ictidomys tridecemlineatus	ENSSTOG00000004505	I
ENSSTOG00000011629	Ictidomys tridecemlineatus	ENSSTOG00000011629	I
ENSTGUG00000007382	Taeniopygia guttata	ENSTGUG00000007382	I
TBX1	Taeniopygia guttata	ENSTGUG00000008395	I
tbx1	Tetraodon nigroviridis	ENSTNIG00000016767	I
tbx1	Takifugu rubripes	ENSTRUG00000014017	I
GB55445	Apis mellifera	GB55445	I
HMEL015536	Heliconius melpomene	HMEL015536	I
KGM_08622	Danaus plexippus	KGM_08622	I
L798_01101	Zootermopsis nevadensis	L798_01101	I
LotgiG104372	Lottia gigantea	LotgiG104372	I
NEMVEDRAFT_v1g214571	Nematostella vectensis	NEMVEDRAFT_v1g214571	I
NV11904	Nasonia vitripennis	NV11904	I
PHUM607490	Pediculus humanus	PHUM607490	I
SMAR009230	Strigamia maritima	SMAR009230	I
TC015327	Tribolium castaneum	TC015327	I
tetur04g00890	Tetranychus urticae	tetur04g00890	I
YQE_10853	Dendroctonus ponderosae	YQE_10853	I
Aan_R010744	Calypte anna	Aan_R010744	I
Alligator_sinensis_CCG022145.1	Alligator sinensis	Alligator_sinensis_CCG022145.1	I
Cflo_09868--XP_624689.2_APIME	Camponotus floridanus	Cflo_09868--XP_624689.2_APIME	I
ENSBTAP00000015683-D1	Bos grunniens	ENSBTAP00000015683-D1	I
ENSP00000331791-D2	Bos grunniens	ENSP00000331791-D2	I
ENSP00000335191	Macaca fascicularis	ENSP00000335191	I
Gfo_R011877	Geospiza fortis	Gfo_R011877	I
Hsal_04471--XP_624689.2_APIME	Harpegnathos saltator	Hsal_04471--XP_624689.2_APIME	I
Myotis_brandtii_Tbx10_10030825	Myotis brandtii	Myotis_brandtii_Tbx10_10030825	I
Myotis_brandtii_Tbx1_10021844	Myotis brandtii	Myotis_brandtii_Tbx1_10021844	I
Ogr08509	Ophisaurus gracilis	Ogr08509	I
Pvit_15846	Pogona vitticeps	Pvit_15846	I
Pvit_16222	Pogona vitticeps	Pvit_16222	I
fgenesh2_kg.scaffold_118000001	Branchiostoma floridae	fgenesh2_kg.scaffold_118000001	I
Sakowv30001714m.g	Saccoglossus kowalevskii	Sakowv30001714m.g	I
CLEC006885	Cimex lectularius	CLEC006885	I
LDEC008541	Leptinotarsa decemlineata	LDEC008541	I
tbx1	Xenopus tropicalis	XB-GENE-478084	I
tbx1.L	Xenopus laevis	XB-GENE-478088	I
tbx1.S	Xenopus laevis	XB-GENE-6254396	I
AALB002686	Anopheles albimanus	AALB002686	I
AARA001806	Anopheles arabiensis	AARA001806	I
AATE015045	Anopheles atroparvus	AATE015045	I
ACUA026816	Anopheles culicifacies	ACUA026816	I
ADIR010556	Anopheles dirus	ADIR010556	I
AEPI001144	Anopheles epiroticus	AEPI001144	I
AFAF008331	Anopheles farauti	AFAF008331	I
AFUN001113	Anopheles funestus	AFUN001113	I
AMAM012836	Anopheles maculatus	AMAM012836	I
AMEC007874	Anopheles melas	AMEC007874	I
AMEM018425	Anopheles merus	AMEM018425	I
AMIN000536	Anopheles minimus	AMIN000536	I
AQUA006531	Anopheles quadriannulatus	AQUA006531	I
ASIS010497	Anopheles sinensis	ASIS010497	I
LLOJ005386	Lutzomyia longipalpis	LLOJ005386	I
MDOA001403	Musca domestica	MDOA001403	I
TBX10	Tursiops truncatus	ENSTTRG00000003781	N

Carubv10013925m.g (Capsella rubella) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1856 Related TFs

Carubv10013925m.g **(Capsella rubella)
AP2**