gene21524-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene21524-v1.0-hybrid T008422_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.880 0.865
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.880 0.865
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.843 0.827
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.843 0.827
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.839 0.827
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.839 0.827
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.833 0.856
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.833 0.856
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna21524.1-v1.0-hybrid AP2 215 272
mrna21524.1-v1.0-hybrid AP2 314 366

Links

Other AP2 family TFs
Other Fragaria vesca TFs

525 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.000
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.000
ARF11 Arabidopsis thaliana AT2G46530 I 0.000
ARF18 Arabidopsis thaliana AT3G61830 I 0.000
BGIOSGA003093 Oryza indica BGIOSGA003093 I 0.000
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.000
Bo01141s010 Brassica oleracea Bo01141s010 I 0.000
Bo3g039330 Brassica oleracea Bo3g039330 I 0.000
Bo3g108130 Brassica oleracea Bo3g108130 I 0.000
Bo4g008150 Brassica oleracea Bo4g008150 I 0.000
Bo8g097320 Brassica oleracea Bo8g097320 I 0.000
Bra004530 Brassica rapa Bra004530 I 0.000
Bra010048 Brassica rapa Bra010048 I 0.000
Bra014419 Brassica rapa Bra014419 I 0.000
Bra018098 Brassica rapa Bra018098 I 0.000
Bra025779 Brassica rapa Bra025779 I 0.000
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.000
BRADI5G10950 Brachypodium distachyon BRADI5G10950 I 0.000
F775_21871 Aegilops tauschii F775_21871 I 0.000
F775_31280 Aegilops tauschii F775_31280 I 0.000
ARF18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002633 I 0.000
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.000
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.000
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.000
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.000
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.000
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.000
GLYMA07G06060 Glycine max GLYMA07G06060 I 0.000
GLYMA07G16170 Glycine max GLYMA07G16170 I 0.000
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.000
GLYMA16G02650 Glycine max GLYMA16G02650 I 0.000
GLYMA18G40180 Glycine max GLYMA18G40180 I 0.000
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.000
GRMZM2G017187 Zea mays GRMZM2G017187 I 0.000
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.000
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.000
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.000
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.000
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.000
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.000
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.000
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.000
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.000
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.000
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.000
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.000
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.000
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.000
LPERR01G07680 Leersia perrieri LPERR01G07680 I 0.000
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.000
MLOC_65945 Hordeum vulgare MLOC_65945 I 0.000
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.000
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.000
MTR_7g062540 Medicago truncatula MTR_7g062540 I 0.000
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.000
OB02G28170 Oryza brachyantha OB02G28170 I 0.000
OB04G20880 Oryza brachyantha OB04G20880 I 0.000
OBART01G08640 Oryza barthii OBART01G08640 I 0.000
OGLUM01G09880 Oryza glumaepatula OGLUM01G09880 I 0.000
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.000
OLONG_005875 Oryza longistaminata OLONG_005875 I 0.000
OLONG_013033 Oryza longistaminata OLONG_013033 I 0.000
OMERI01G08660 Oryza meridionalis OMERI01G08660 I 0.000
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.000
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.000
OPUNC01G08500 Oryza punctata OPUNC01G08500 I 0.000
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.000
ORGLA01G0077700 Oryza glaberrima ORGLA01G0077700 I 0.000
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.000
ORUFI01G09450 Oryza rufipogon ORUFI01G09450 I 0.000
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.000
ARF1 Oryza sativa OS01G0236300 I 0.000
ARF9 Oryza sativa OS04G0442000 I 0.000
PGSC0003DMG400000118 Solanum tuberosum PGSC0003DMG400000118 I 0.000
PGSC0003DMG400012261 Solanum tuberosum PGSC0003DMG400012261 I 0.000
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.000
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.000
POPTR_0001s13110 Populus trichocarpa POPTR_0001s13110 I 0.000
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.000
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.000
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.000
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.000
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.000
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.000
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.000
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.000
PRUPE_ppa002617mg Prunus persica PRUPE_ppa002617mg I 0.000
Sb03g000530 Sorghum bicolor Sb03g000530 I 0.000
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.000
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.000
ARF11 Arabidopsis lyrata scaffold_403621.1 I 0.000
Si000340m.g Setaria italica Si000340m.g I 0.000
Si009558m.g Setaria italica Si009558m.g I 0.000
Si016562m.g Setaria italica Si016562m.g I 0.000
Si021216m.g Setaria italica Si021216m.g I 0.000
Solyc01g096070.2 Solanum lycopersicum Solyc01g096070.2 I 0.000
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.000
Solyc08g082630.2 Solanum lycopersicum Solyc08g082630.2 I 0.000
TCM_005126 Theobroma cacao TCM_005126 I 0.000
TCM_008374 Theobroma cacao TCM_008374 I 0.000
TCM_016500 Theobroma cacao TCM_016500 I 0.000
TCM_027113 Theobroma cacao TCM_027113 I 0.000
TCM_029792 Theobroma cacao TCM_029792 I 0.000
Traes_2BL_1AED96909 Triticum aestivum Traes_2BL_1AED96909 I 0.000
TRAES3BF007300580CFD_g Triticum aestivum TRAES3BF007300580CFD_g I 0.000
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.000
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.000
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.000
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.000
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.000
Ca_21948 Cicer arietinum Ca_21948 I 0.000
Ca_23296 Cicer arietinum Ca_23296 I 0.000
Cla011540 Citrullus lanatus Cla011540 I 0.000
Cla013021 Citrullus lanatus Cla013021 I 0.000
Cla019614 Citrullus lanatus Cla019614 I 0.000
Pm018352 Prunus mume Pm018352 I 0.000
Pm024149 Prunus mume Pm024149 I 0.000
30068.m002516 Ricinus communis 30068.m002516 I 0.000
30128.m008545 Ricinus communis 30128.m008545 I 0.000
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.000
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.000
cassava29828.valid.m1 Manihot esculenta cassava29828.valid.m1 I 0.000
cassava32762.m1 Manihot esculenta cassava32762.m1 I 0.000
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.000
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.000
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.000
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.000
cassava42790.valid.m1 Manihot esculenta cassava42790.valid.m1 I 0.000
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.000
cassava44131.valid.m1 Manihot esculenta cassava44131.valid.m1 I 0.000
cassava44132.valid.m1 Manihot esculenta cassava44132.valid.m1 I 0.000
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.000
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.000
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.000
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.000
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.000
cassava47296.m1 Manihot esculenta cassava47296.m1 I 0.000
cassava47297.m1 Manihot esculenta cassava47297.m1 I 0.000
cassava47298.m1 Manihot esculenta cassava47298.m1 I 0.000
cassava47299.m1 Manihot esculenta cassava47299.m1 I 0.000
cassava47300.m1 Manihot esculenta cassava47300.m1 I 0.000
cassava47301.m1 Manihot esculenta cassava47301.m1 I 0.000
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.000
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.000
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.000
Cucsa.303990 Cucumis sativus Cucsa.303990 I 0.000
mgf005549m Mimulus guttatus mgf005549m I 0.000
mgf006511m Mimulus guttatus mgf006511m I 0.000
mgf015308m Mimulus guttatus mgf015308m I 0.000
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.000
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.000
Aquca_013_00067 Aquilegia coerulea Aquca_013_00067 I 0.000
Bostr.13158s0186 Boechera stricta Bostr.13158s0186 I 0.000
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.000
Cagra.0050s0046 Capsella grandiflora Cagra.0050s0046 I 0.000
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.000
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.000
Carubv10022841m.g Capsella rubella Carubv10022841m.g I 0.000
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.000
Ciclev10019174m.g Citrus clementina Ciclev10019174m.g I 0.000
Ciclev10019257m.g Citrus clementina Ciclev10019257m.g I 0.000
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.000
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.000
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.000
Eucgr.E00888 Eucalyptus grandis Eucgr.E00888 I 0.000
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.000
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.000
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.000
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.000
gene19138-v1.0-hybrid Fragaria vesca gene19138-v1.0-hybrid I 0.000
gene25123-v1.0-hybrid Fragaria vesca gene25123-v1.0-hybrid I 0.000
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.000
Gorai.001G153900 Gossypium raimondii Gorai.001G153900 I 0.000
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.000
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.000
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.000
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.000
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.000
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.000
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.000
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.000
MDP0000139073 Malus domestica MDP0000139073 I 0.000
MDP0000194603 Malus domestica MDP0000194603 I 0.000
MDP0000258032 Malus domestica MDP0000258032 I 0.000
MDP0000310875 Malus domestica MDP0000310875 I 0.000
MDP0000929655 Malus domestica MDP0000929655 I 0.000
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.000
orange1.1g005060m.g Citrus sinensis orange1.1g005060m.g I 0.000
orange1.1g005368m.g Citrus sinensis orange1.1g005368m.g I 0.000
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.000
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.000
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.000
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.000
Pavir.Ea00026 Panicum virgatum Pavir.Ea00026 I 0.000
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.000
Pavir.Eb00045 Panicum virgatum Pavir.Eb00045 I 0.000
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.000
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.000
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.000
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.000
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.000
SapurV1A.0013s0230 Salix purpurea SapurV1A.0013s0230 I 0.000
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.000
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.000
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.000
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.000
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.000
Thhalv10001365m.g Eutrema salsugineum Thhalv10001365m.g I 0.000
Thhalv10005857m.g Eutrema salsugineum Thhalv10005857m.g I 0.000
PK02218.1 Cannabis sativa PK02218.1 I 0.000
PK07332.1 Cannabis sativa PK07332.1 I 0.000
PK12669.1 Cannabis sativa PK12669.1 I 0.000
PK16974.1 Cannabis sativa PK16974.1 I 0.000
chr1.LjT43L07.10.nd Lotus japonicus chr1.LjT43L07.10.nd I 0.000
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.000
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.000
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.000
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.000
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.000
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.000
PDK_20s1651081g001 Phoenix dactylifera PDK_20s1651081g001 I 0.000
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.000
BRADI2G08120 Brachypodium distachyon BRADI2G08120 N 0.000
GRMZM2G475263 Zea mays GRMZM2G475263 N 0.000
OB01G18840 Oryza brachyantha OB01G18840 N 0.000
ONIVA01G11220 Oryza nivara ONIVA01G11220 N 0.000
Si000540m.g Setaria italica Si000540m.g N 0.000
Traes_3AS_9594B1341 Triticum aestivum Traes_3AS_9594B1341 N 0.000