Gorai.004G165300 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.004G165300 T008526_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.811 0.959
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.811 0.959
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.798 0.939
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.798 0.939
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.780 0.857
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.780 0.857
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.780 0.857
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.772 0.939
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.734 0.878
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.734 0.878
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.734 0.878
AT3G16280
M06618_2.00 		Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
AT3G16280_col_a 		0.724 0.816
AT3G16280
M06619_2.00 		Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV		 Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a 		0.724 0.816
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.719 0.898
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.719 0.898
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.719 0.898
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.719 0.878
ERF037
M00843_2.00 		Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN		 PBM
Franco-Zorrilla et al.(2014)
At1g77200 		0.707 0.837
ERF037
M06599_2.00 		Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR		 Dap-seq
OMalley et al.(2016)
AT1G77200_col_a 		0.707 0.837
ERF037
M06600_2.00 		Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN		 Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a 		0.707 0.837
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.693 0.837
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.693 0.837
Q3HS42_BRANA
M09739_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII4_01 		0.692 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G165300.1 AP2 86 136

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

460 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC087 Arabidopsis thaliana AT5G18270 D
ANAC100 Arabidopsis lyrata fgenesh2_kg.8__2118__AT5G61430.1 D
anac046 Arabidopsis thaliana AT3G04060 D
Bostr.2570s0302 Boechera stricta Bostr.2570s0302 I
Cla012339 Citrullus lanatus Cla012339 I
Carubv10014118m.g Capsella rubella Carubv10014118m.g I
Carubv10001373m.g Capsella rubella Carubv10001373m.g I
Cagra.2026s0002 Capsella grandiflora Cagra.2026s0002 I
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I
Cagra.0542s0037 Capsella grandiflora Cagra.0542s0037 I
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I
Aquca_014_00944 Aquilegia coerulea Aquca_014_00944 I
Cucsa.002980 Cucumis sativus Cucsa.002980 I
cassava35698.valid.m1 Manihot esculenta cassava35698.valid.m1 I
cassava25877.m1 Manihot esculenta cassava25877.m1 I
29950.m001171 Ricinus communis 29950.m001171 I
Pm025307 Prunus mume Pm025307 I
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I
Carubv10026752m.g Capsella rubella Carubv10026752m.g I
Ciclev10020549m.g Citrus clementina Ciclev10020549m.g I
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I
gene20686-v1.0-hybrid Fragaria vesca gene20686-v1.0-hybrid I
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I
Lus10003435.g Linum usitatissimum Lus10003435.g I
Lus10026879.g Linum usitatissimum Lus10026879.g I
MDP0000184069 Malus domestica MDP0000184069 I
orange1.1g016542m.g Citrus sinensis orange1.1g016542m.g I
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I
SapurV1A.0867s0130 Salix purpurea SapurV1A.0867s0130 I
SapurV1A.1196s0010 Salix purpurea SapurV1A.1196s0010 I
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I
Thhalv10021125m.g Eutrema salsugineum Thhalv10021125m.g I
Bo9g175670 Brassica oleracea Bo9g175670 I
Bra040153 Brassica rapa Bra040153 I
Bra036223 Brassica rapa Bra036223 I
Bra031950 Brassica rapa Bra031950 I
Bra029313 Brassica rapa Bra029313 I
Bra023669 Brassica rapa Bra023669 I
Bra012960 Brassica rapa Bra012960 I
Bra006449 Brassica rapa Bra006449 I
Bra002148 Brassica rapa Bra002148 I
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I
Bo9g157320 Brassica oleracea Bo9g157320 I
Bo7g098620 Brassica oleracea Bo7g098620 I
Bo5g148430 Brassica oleracea Bo5g148430 I
Bo3g013050 Brassica oleracea Bo3g013050 I
Bo2g161570 Brassica oleracea Bo2g161570 I
Bo2g015440 Brassica oleracea Bo2g015440 I
Bo1g152230 Brassica oleracea Bo1g152230 I
Ca_19144 Cicer arietinum Ca_19144 I
GLYMA02G07760 Glycine max GLYMA02G07760 I
GLYMA16G04720 Glycine max GLYMA16G04720 I
GLYMA16G26810 Glycine max GLYMA16G26810 I
GLYMA19G28515 Glycine max GLYMA19G28515 I
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I
GSMUA_Achr6G08600_001 Musa acuminata GSMUA_Achr6G08600_001 I
GSMUA_Achr7G18330_001 Musa acuminata GSMUA_Achr7G18330_001 I
MTR_6g032770 Medicago truncatula MTR_6g032770 I
POPTR_0013s05110 Populus trichocarpa POPTR_0013s05110 I
POPTR_0019s04710 Populus trichocarpa POPTR_0019s04710 I
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I
TCM_026028 Theobroma cacao TCM_026028 I
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I
VIT_17s0000g06400 Vitis vinifera VIT_17s0000g06400 I
Ca_08255 Cicer arietinum Ca_08255 I