orange1.1g029015m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g029015m.g T009241_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.766 0.860
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.766 0.860
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.728 0.820
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.728 0.820
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.728 0.820
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.727 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.727 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.727 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.727 0.820
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.697 0.800
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.697 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.689 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.689 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.689 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.689 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.689 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.689 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g029015m AP2 43 94

Links

Other AP2 family TFs
Other Citrus sinensis TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa000933mg Prunus persica PRUPE_ppa000933mg I 0.000
Eucgr.E01022 Eucalyptus grandis Eucgr.E01022 I 0.000
Ciclev10018669m.g Citrus clementina Ciclev10018669m.g I 0.000
Aquca_010_00024 Aquilegia coerulea Aquca_010_00024 I 0.000
mgf013203m Mimulus guttatus mgf013203m I 0.000
cassava7989.valid.m1 Manihot esculenta cassava7989.valid.m1 I 0.000
Pm022106 Prunus mume Pm022106 I 0.000
Pm020817 Prunus mume Pm020817 I 0.000
TCM_019949 Theobroma cacao TCM_019949 I 0.000
Solyc08g008410.2 Solanum lycopersicum Solyc08g008410.2 I 0.000
evm.TU.supercontig_9.328 Carica papaya evm.TU.supercontig_9.328 I 0.000
POPTR_0003s14300 Populus trichocarpa POPTR_0003s14300 I 0.000
POPTR_0001s10970 Populus trichocarpa POPTR_0001s10970 I 0.000
PGSC0003DMG402012256 Solanum tuberosum PGSC0003DMG402012256 I 0.000
PGSC0003DMG401005796 Solanum tuberosum PGSC0003DMG401005796 I 0.000
OS04G0495800 Oryza sativa OS04G0495800 I 0.000
NLP3 Oryza sativa OS01G0236700 I 0.000
ORUFI11G09500 Oryza rufipogon ORUFI11G09500 I 0.000
ORUFI04G18750 Oryza rufipogon ORUFI04G18750 I 0.000
MDP0000788505 Malus domestica MDP0000788505 I 0.000
chr3.LjT23H01.20.nc Lotus japonicus chr3.LjT23H01.20.nc I 0.000
chr2.CM0904.130.nd Lotus japonicus chr2.CM0904.130.nd I 0.000
PK00728.1 Cannabis sativa PK00728.1 I 0.000
Thhalv10023271m.g Eutrema salsugineum Thhalv10023271m.g I 0.000
SapurV1A.3634s0010 Salix purpurea SapurV1A.3634s0010 I 0.000
SapurV1A.0374s0230 Salix purpurea SapurV1A.0374s0230 I 0.000
SapurV1A.0035s0170 Salix purpurea SapurV1A.0035s0170 I 0.000
orange1.1g001774m.g Citrus sinensis orange1.1g001774m.g I 0.000
ORUFI01G09470 Oryza rufipogon ORUFI01G09470 I 0.000
MDP0000265619 Malus domestica MDP0000265619 I 0.000
MDP0000246881 Malus domestica MDP0000246881 I 0.000
MDP0000239938 Malus domestica MDP0000239938 I 0.000
MDP0000132856 Malus domestica MDP0000132856 I 0.000
Lus10003199.g Linum usitatissimum Lus10003199.g I 0.000
Gorai.005G126000 Gossypium raimondii Gorai.005G126000 I 0.000
Gorai.002G206700 Gossypium raimondii Gorai.002G206700 I 0.000
gene16194-v1.0-hybrid Fragaria vesca gene16194-v1.0-hybrid I 0.000
GLYMA11G13390 Glycine max GLYMA11G13390 I 0.000
NLP6 Arabidopsis thaliana AT1G64530 I 0.000
OB01G18870 Oryza brachyantha OB01G18870 I 0.000
MTR_4g068000 Medicago truncatula MTR_4g068000 I 0.000
MLOC_66539 Hordeum vulgare MLOC_66539 I 0.000
LPERR01G07660 Leersia perrieri LPERR01G07660 I 0.000
GRMZM2G176655 Zea mays GRMZM2G176655 I 0.000
GRMZM2G042278 Zea mays GRMZM2G042278 I 0.000
GLYMA12G05390 Glycine max GLYMA12G05390 I 0.000
OB04G24560 Oryza brachyantha OB04G24560 I 0.000
GLYMA09G25230 Glycine max GLYMA09G25230 I 0.000
fgenesh2_kg.2__24__AT1G64530.1 Arabidopsis lyrata fgenesh2_kg.2__24__AT1G64530.1 I 0.000
BRADI2G31710 Brachypodium distachyon BRADI2G31710 I 0.000
Bra040914 Brassica rapa Bra040914 I 0.000
Bo9g032270 Brassica oleracea Bo9g032270 I 0.000
BGIOSGA034185 Oryza indica BGIOSGA034185 I 0.000
BGIOSGA016686 Oryza indica BGIOSGA016686 I 0.000
BGIOSGA003095 Oryza indica BGIOSGA003095 I 0.000
OMERI04G14630 Oryza meridionalis OMERI04G14630 I 0.000
ORGLA11G0080000 Oryza glaberrima ORGLA11G0080000 I 0.000
ORGLA04G0144400 Oryza glaberrima ORGLA04G0144400 I 0.000
ORGLA01G0077900 Oryza glaberrima ORGLA01G0077900 I 0.000
OPUNC01G08520 Oryza punctata OPUNC01G08520 I 0.000
ONIVA11G08980 Oryza nivara ONIVA11G08980 I 0.000
ONIVA04G15630 Oryza nivara ONIVA04G15630 I 0.000
ONIVA01G11240 Oryza nivara ONIVA01G11240 I 0.000
OMERI11G08010 Oryza meridionalis OMERI11G08010 I 0.000
OBART01G08660 Oryza barthii OBART01G08660 I 0.000
OMERI01G08690 Oryza meridionalis OMERI01G08690 I 0.000
OLONG_009319 Oryza longistaminata OLONG_009319 I 0.000
OLONG_006342 Oryza longistaminata OLONG_006342 I 0.000
OLONG_005878 Oryza longistaminata OLONG_005878 I 0.000
OGLUM11G08660 Oryza glumaepatula OGLUM11G08660 I 0.000
OGLUM01G09910 Oryza glumaepatula OGLUM01G09910 I 0.000
OBART04G17320 Oryza barthii OBART04G17320 I 0.000
Bra000308 Brassica rapa Bra000308 N 0.000
LPERR04G13900 Leersia perrieri LPERR04G13900 N 0.000