CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ib00287 *(Panicum virgatum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Pavir.Ib00287	T009519_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.794	0.800
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.780	0.800
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.780	0.800
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.769	0.800
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.754	0.760
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.748	0.780
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.748	0.780
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.748	0.780
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.747	0.760
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.746	0.720
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.746	0.720
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.746	0.720
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.745	0.680
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.745	0.680
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.742	0.800
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.742	0.800
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.742	0.800
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.733	0.760
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.730	0.740
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.729	0.740
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.727	0.740
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.727	0.740
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.727	0.740
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.727	0.740
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.727	0.740
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.723	0.720
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.723	0.800
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.716	0.700
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.714	0.760
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.710	0.720
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.710	0.720
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.710	0.720
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.710	0.740
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.710	0.740
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.710	0.740
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.707	0.760
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.707	0.760
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.706	0.740
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.706	0.740
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.705	0.720
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.705	0.720
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.703	0.740
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.703	0.740
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.701	0.680
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.700	0.720
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.700	0.700
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.700	0.700
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.696	0.740
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.694	0.700
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.693	0.640
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.693	0.640
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.692	0.660
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.690	0.740
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.690	0.740
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.690	0.740
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.690	0.720
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.690	0.720
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.690	0.720
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.690	0.680
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.689	0.660
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.689	0.660
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.687	0.700
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.686	0.640
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.685	0.680
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.685	0.680
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.684	0.660
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.683	0.720
OS05G0497200 M01636_2.00	Oryza sativa	CGSCGCCR	YGGCGSCG	PBM Weirauch et al.(2014) pTH8640	0.682	0.640
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.677	0.640
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ib00287.1.p	AP2	8	60	GKYRGVRKRPWGKFAAEIRDPERGGSRVWLGTFDTAEEAARAYDRAAFAMKGA

Links
Other AP2 family TFs
Other *Panicum virgatum* TFs

2070 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Cucsa.353040	Cucumis sativus	Cucsa.353040	I
evm.TU.supercontig_224.4	Carica papaya	evm.TU.supercontig_224.4	N
evm.TU.supercontig_99.39	Carica papaya	evm.TU.supercontig_99.39	N
evm.TU.supercontig_129.70	Carica papaya	evm.TU.supercontig_129.70	N
Eucgr.A02341	Eucalyptus grandis	Eucgr.A02341	N
Ciclev10005012m.g	Citrus clementina	Ciclev10005012m.g	N
Carubv10023272m.g	Capsella rubella	Carubv10023272m.g	N
Cagra.0914s0005	Capsella grandiflora	Cagra.0914s0005	N
Bostr.11568s0008	Boechera stricta	Bostr.11568s0008	N
Aquca_009_00241	Aquilegia coerulea	Aquca_009_00241	N
mgf019897m	Mimulus guttatus	mgf019897m	N
mgf017600m	Mimulus guttatus	mgf017600m	N
Cucsa.338170	Cucumis sativus	Cucsa.338170	N
cassava421.valid.m1	Manihot esculenta	cassava421.valid.m1	N
cassava40681.m1	Manihot esculenta	cassava40681.m1	N
cassava19560.m1	Manihot esculenta	cassava19560.m1	N
30170.m013669	Ricinus communis	30170.m013669	N
30006.m000282	Ricinus communis	30006.m000282	N
Cla022214	Citrullus lanatus	Cla022214	N
Ca_07237	Cicer arietinum	Ca_07237	N
VIT_08s0007g08580	Vitis vinifera	VIT_08s0007g08580	N
Pavir.Ca01410	Panicum virgatum	Pavir.Ca01410	N
PDK_20s1313371g002	Phoenix dactylifera	PDK_20s1313371g002	N
LjSGA_012098.1	Lotus japonicus	LjSGA_012098.1	N
chr3.CM0452.130.nd	Lotus japonicus	chr3.CM0452.130.nd	N
PK18855.1	Cannabis sativa	PK18855.1	N
PK15670.1	Cannabis sativa	PK15670.1	N
PK12273.1	Cannabis sativa	PK12273.1	N
Thhalv10016812m.g	Eutrema salsugineum	Thhalv10016812m.g	N
SapurV1A.3066s0020	Salix purpurea	SapurV1A.3066s0020	N
SapurV1A.0037s0030	Salix purpurea	SapurV1A.0037s0030	N
Pavir.Cb01456	Panicum virgatum	Pavir.Cb01456	N
BBM	Vitis vinifera	VIT_04s0023g00950	N
orange1.1g018292m.g	Citrus sinensis	orange1.1g018292m.g	N
MDP0000803527	Malus domestica	MDP0000803527	N
MDP0000314518	Malus domestica	MDP0000314518	N
Lus10040140.g	Linum usitatissimum	Lus10040140.g	N
Lus10039650.g	Linum usitatissimum	Lus10039650.g	N
Lus10011730.g	Linum usitatissimum	Lus10011730.g	N
Lus10000965.g	Linum usitatissimum	Lus10000965.g	N
Gorai.003G091500	Gossypium raimondii	Gorai.003G091500	N
gene02470-v1.0-hybrid	Fragaria vesca	gene02470-v1.0-hybrid	N
GLYMA02G33090	Glycine max	GLYMA02G33090	N
OBART05G15060	Oryza barthii	OBART05G15060	N
OB06G31060	Oryza brachyantha	OB06G31060	N
OB05G22940	Oryza brachyantha	OB05G22940	N
OB03G42600	Oryza brachyantha	OB03G42600	N
MLOC_7325	Hordeum vulgare	MLOC_7325	N
LPERR05G11930	Leersia perrieri	LPERR05G11930	N
GRMZM2G146688	Zea mays	GRMZM2G146688	N
GRMZM2G013657	Zea mays	GRMZM2G013657	N
GLYMA19G31960	Glycine max	GLYMA19G31960	N
GLYMA03G29240	Glycine max	GLYMA03G29240	N
OBART06G23380	Oryza barthii	OBART06G23380	N
fgenesh2_kg.4__2311__AT2G41710.2	Arabidopsis lyrata	fgenesh2_kg.4__2311__AT2G41710.2	N
F775_10869	Aegilops tauschii	F775_10869	N
BRADI2G26987	Brachypodium distachyon	BRADI2G26987	N
Bra004641	Brassica rapa	Bra004641	N
Bo4g013420	Brassica oleracea	Bo4g013420	N
Bo3g035770	Brassica oleracea	Bo3g035770	N
BGIOSGA023402	Oryza indica	BGIOSGA023402	N
BGIOSGA019793	Oryza indica	BGIOSGA019793	N
AT2G41710	Arabidopsis thaliana	AT2G41710	N
ORUFI05G16140	Oryza rufipogon	ORUFI05G16140	N
TRIUR3_07433	Triticum urartu	TRIUR3_07433	N
Traes_6AS_53FA034C9	Triticum aestivum	Traes_6AS_53FA034C9	N
TCM_024554	Theobroma cacao	TCM_024554	N
Solyc02g030210.2	Solanum lycopersicum	Solyc02g030210.2	N
Si021952m.g	Setaria italica	Si021952m.g	N
Sb09g019190	Sorghum bicolor	Sb09g019190	N
PRUPE_ppa006202mg	Prunus persica	PRUPE_ppa006202mg	N
POPTR_0016s05670	Populus trichocarpa	POPTR_0016s05670	N
POPTR_0006s04820	Populus trichocarpa	POPTR_0006s04820	N
AMTR_s00159p00062070	Amborella trichopoda	AMTR_s00159p00062070	N
ORGLA05G0129100	Oryza glaberrima	ORGLA05G0129100	N
OPUNC05G13110	Oryza punctata	OPUNC05G13110	N
ONIVA05G15390	Oryza nivara	ONIVA05G15390	N
OMERI06G23370	Oryza meridionalis	OMERI06G23370	N
OMERI05G13370	Oryza meridionalis	OMERI05G13370	N
OLONG_020459	Oryza longistaminata	OLONG_020459	N
OLONG_002212	Oryza longistaminata	OLONG_002212	N
OGLUM06G03000	Oryza glumaepatula	OGLUM06G03000	N
OGLUM05G15890	Oryza glumaepatula	OGLUM05G15890	N

Pavir.Ib00287 (Panicum virgatum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

2070 Related TFs

Pavir.Ib00287 **(Panicum virgatum)
AP2**