ARID5A (Procavia capensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSPCAG00000006363 T014710_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN

NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.785 1.000
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN

NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.785 1.000
arid6
M01657_2.00
Danio rerio
NNRWATYN

NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.649 0.647
Arid5b
M01661_2.00
Mus musculus
NDATWHNN

NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.632 0.753
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.632 0.753
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.632 0.753
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB

VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.632 0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN

NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.493 0.588
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000005945 ARID/BRIGHT 92 177

Links

Other ARID/BRIGHT family TFs
Other Procavia capensis TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OPUNC06G25880 Oryza punctata OPUNC06G25880 N
PDK_20s1401711g002 Phoenix dactylifera PDK_20s1401711g002 N
Pavir.Ib01650 Panicum virgatum Pavir.Ib01650 N
30190.m011218 Ricinus communis 30190.m011218 N
Cla011637 Citrullus lanatus Cla011637 N
Si005667m.g Setaria italica Si005667m.g N
Sb10g031260 Sorghum bicolor Sb10g031260 N
OS06G0731600 Oryza sativa OS06G0731600 N
ORUFI06G30290 Oryza rufipogon ORUFI06G30290 N
ORGLA06G0289500 Oryza glaberrima ORGLA06G0289500 N
BGIOSGA020494 Oryza indica BGIOSGA020494 N
ONIVA06G31490 Oryza nivara ONIVA06G31490 N
OMERI06G28260 Oryza meridionalis OMERI06G28260 N
OGLUM06G29760 Oryza glumaepatula OGLUM06G29760 N
OBART06G28370 Oryza barthii OBART06G28370 N
OB06G36110 Oryza brachyantha OB06G36110 N
LPERR06G23820 Leersia perrieri LPERR06G23820 N
GRMZM2G466292 Zea mays GRMZM2G466292 N
BRADI1G29247 Brachypodium distachyon BRADI1G29247 N