CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ARID5A
(
Procavia capensis
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
ENSPCAG00000006363
T014710_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN
NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.785
1.000
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN
NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.785
1.000
arid6
M01657_2.00
Danio rerio
NNRWATYN
NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.649
0.647
Arid5b
M01661_2.00
Mus musculus
NDATWHNN
NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.632
0.753
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.632
0.753
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.632
0.753
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.632
0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.493
0.588
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000005945
ARID/BRIGHT
92
177
EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
Links
Other
ARID/BRIGHT
family TFs
Other
Procavia capensis
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OPUNC06G25880
Oryza punctata
OPUNC06G25880
N
PDK_20s1401711g002
Phoenix dactylifera
PDK_20s1401711g002
N
Pavir.Ib01650
Panicum virgatum
Pavir.Ib01650
N
30190.m011218
Ricinus communis
30190.m011218
N
Cla011637
Citrullus lanatus
Cla011637
N
Si005667m.g
Setaria italica
Si005667m.g
N
Sb10g031260
Sorghum bicolor
Sb10g031260
N
OS06G0731600
Oryza sativa
OS06G0731600
N
ORUFI06G30290
Oryza rufipogon
ORUFI06G30290
N
ORGLA06G0289500
Oryza glaberrima
ORGLA06G0289500
N
BGIOSGA020494
Oryza indica
BGIOSGA020494
N
ONIVA06G31490
Oryza nivara
ONIVA06G31490
N
OMERI06G28260
Oryza meridionalis
OMERI06G28260
N
OGLUM06G29760
Oryza glumaepatula
OGLUM06G29760
N
OBART06G28370
Oryza barthii
OBART06G28370
N
OB06G36110
Oryza brachyantha
OB06G36110
N
LPERR06G23820
Leersia perrieri
LPERR06G23820
N
GRMZM2G466292
Zea mays
GRMZM2G466292
N
BRADI1G29247
Brachypodium distachyon
BRADI1G29247
N