Solyc12g094730.1 (Solanum lycopersicum)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 Solyc12g094730.1 T015642_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.627 0.694
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.538 0.635
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g094730.1.1 ARID/BRIGHT 60 145

Links

Other ARID/BRIGHT family TFs
Other Solanum lycopersicum TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G16190 Glycine max GLYMA08G16190 I
GLYMA12G36750 Glycine max GLYMA12G36750 I
GLYMA13G27455 Glycine max GLYMA13G27455 I
GLYMA15G42680 Glycine max GLYMA15G42680 I
MTR_3g027650 Medicago truncatula MTR_3g027650 I
MTR_3g028520 Medicago truncatula MTR_3g028520 I
POPTR_0001s27680 Populus trichocarpa POPTR_0001s27680 I
Ca_26916 Cicer arietinum Ca_26916 I
Cla015469 Citrullus lanatus Cla015469 I
30149.m000231 Ricinus communis 30149.m000231 I
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I
Cucsa.050160 Cucumis sativus Cucsa.050160 I
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I