e_gw.4.260.1_CONSTRUCT (PBM CONSTRUCTS)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 e_gw.4.260.1_CONSTRUCT T015942_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw.4.260.1_CONSTRUCT
M01668_2.00		 PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.493 0.581
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.493 0.581
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.489 0.558
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.482 0.593
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.482 0.593
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.482 0.593
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.482 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01668_2.00 ARID/BRIGHT 21 107

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.4.260.1_CONSTRUCT ARID/BRIGHT 21 107

Links

Other ARID/BRIGHT family TFs
Other PBM CONSTRUCTS TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ003689 Culex pipiens CpipJ_CPIJ003689 N 0.000
AAEL003097 Aedes aegypti AAEL003097 N 0.000
ACEP21389 Atta cephalotes ACEP21389 N 0.000
ACYPI47146 Acyrthosiphon pisum ACYPI47146 N 0.000
ADAC004139 Anopheles darlingi ADAC004139 N 0.000
AGAP007133 Anopheles gambiae AGAP007133 N 0.000
CapteG124203 Capitella teleta CapteG124203 N 0.000
CGI_10022084 Crassostrea gigas CGI_10022084 N 0.000
CPIJ003689 Culex quinquefasciatus CPIJ003689 N 0.000
DAPPUDRAFT_312030 Daphnia pulex DAPPUDRAFT_312030 N 0.000
ENSAMEG00000006258 Ailuropoda melanoleuca ENSAMEG00000006258 N 0.000
ENSAMXG00000003636 Astyanax mexicanus ENSAMXG00000003636 N 0.000
ENSAMXG00000013350 Astyanax mexicanus ENSAMXG00000013350 N 0.000
CAMTA2 Bos taurus ENSBTAG00000008591 N 0.000
CAMTA2 Canis familiaris ENSCAFG00000015674 N 0.000
CAMTA1 Canis familiaris ENSCAFG00000019650 N 0.000
CAMTA2 Callithrix jacchus ENSCJAG00000011609 N 0.000
CAMTA2 Cavia porcellus ENSCPOG00000007319 N 0.000
CAMTA1 Cavia porcellus ENSCPOG00000014759 N 0.000
ENSCSAG00000012903 Chlorocebus sabaeus ENSCSAG00000012903 N 0.000
camta1a Danio rerio ENSDARG00000077428 N 0.000
CAMTA2 Dasypus novemcinctus ENSDNOG00000036357 N 0.000
Camta1 Dipodomys ordii ENSDORG00000003017 N 0.000
Camta2 Dipodomys ordii ENSDORG00000011763 N 0.000
CAMTA2 Equus caballus ENSECAG00000019370 N 0.000
ENSFALG00000009834 Ficedula albicollis ENSFALG00000009834 N 0.000
CAMTA2 Felis catus ENSFCAG00000008698 N 0.000
CAMTA2 Homo sapiens ENSG00000108509 N 0.000
CAMTA1 Homo sapiens ENSG00000171735 N 0.000
ENSGACG00000001106 Gasterosteus aculeatus ENSGACG00000001106 N 0.000
camta1b Gasterosteus aculeatus ENSGACG00000007914 N 0.000
CAMTA1 Gorilla gorilla ENSGGOG00000003577 N 0.000
CAMTA2 Gorilla gorilla ENSGGOG00000009188 N 0.000
ENSGMOG00000017650 Gadus morhua ENSGMOG00000017650 N 0.000
ENSGMOG00000019408 Gadus morhua ENSGMOG00000019408 N 0.000
ENSLACG00000014574 Latimeria chalumnae ENSLACG00000014574 N 0.000
CAMTA2 Loxodonta africana ENSLAFG00000012042 N 0.000
ENSLOCG00000013712 Lepisosteus oculatus ENSLOCG00000013712 N 0.000
ENSMEUG00000007952 Macropus eugenii ENSMEUG00000007952 N 0.000
CAMTA2 Microcebus murinus ENSMICG00000012537 N 0.000
CAMTA2 Myotis lucifugus ENSMLUG00000014019 N 0.000
CAMTA2 Macaca mulatta ENSMMUG00000009176 N 0.000
CAMTA2 Monodelphis domestica ENSMODG00000005219 N 0.000
ENSMODG00000005842 Monodelphis domestica ENSMODG00000005842 N 0.000
ENSMPUG00000006733 Mustela putorius furo ENSMPUG00000006733 N 0.000
ENSMPUG00000011010 Mustela putorius furo ENSMPUG00000011010 N 0.000
Camta1 Mus musculus ENSMUSG00000014592 N 0.000
Camta2 Mus musculus ENSMUSG00000040712 N 0.000
ENSNLEG00000017452 Nomascus leucogenys ENSNLEG00000017452 N 0.000
ENSOANG00000030450 Ornithorhynchus anatinus ENSOANG00000030450 N 0.000
ENSOARG00000004897 Ovis aries ENSOARG00000004897 N 0.000
CAMTA2 Oryctolagus cuniculus ENSOCUG00000001109 N 0.000
CAMTA1 Otolemur garnettii ENSOGAG00000009792 N 0.000
CAMTA2 Otolemur garnettii ENSOGAG00000014734 N 0.000
ENSONIG00000004505 Oreochromis niloticus ENSONIG00000004505 N 0.000
ENSONIG00000019368 Oreochromis niloticus ENSONIG00000019368 N 0.000
CAMTA1 Ochotona princeps ENSOPRG00000015968 N 0.000
camta1b Oryzias latipes ENSORLG00000016337 N 0.000
ENSPANG00000024316 Papio anubis ENSPANG00000024316 N 0.000
ENSPFOG00000000859 Poecilia formosa ENSPFOG00000000859 N 0.000
ENSPFOG00000004225 Poecilia formosa ENSPFOG00000004225 N 0.000
ENSPFOG00000016244 Poecilia formosa ENSPFOG00000016244 N 0.000
ENSPPYG00000001932 Pongo abelii ENSPPYG00000001932 N 0.000
ENSPPYG00000007853 Pongo abelii ENSPPYG00000007853 N 0.000
ENSPSIG00000004616 Pelodiscus sinensis ENSPSIG00000004616 N 0.000
CAMTA1 Pan troglodytes ENSPTRG00000000096 N 0.000
CAMTA2 Pan troglodytes ENSPTRG00000023129 N 0.000
CAMTA2 Pteropus vampyrus ENSPVAG00000003768 N 0.000
CAMTA1 Pteropus vampyrus ENSPVAG00000005390 N 0.000
Camta2 Rattus norvegicus ENSRNOG00000004283 N 0.000
Camta1 Rattus norvegicus ENSRNOG00000018602 N 0.000
CAMTA2 Sorex araneus ENSSARG00000004137 N 0.000
ENSSHAG00000006160 Sarcophilus harrisii ENSSHAG00000006160 N 0.000
CAMTA2 Sus scrofa ENSSSCG00000017902 N 0.000
ENSSTOG00000003897 Ictidomys tridecemlineatus ENSSTOG00000003897 N 0.000
ENSSTOG00000011183 Ictidomys tridecemlineatus ENSSTOG00000011183 N 0.000
CAMTA1 Taeniopygia guttata ENSTGUG00000002566 N 0.000
ENSTNIG00000003621 Tetraodon nigroviridis ENSTNIG00000003621 N 0.000
ENSTRUG00000000888 Takifugu rubripes ENSTRUG00000000888 N 0.000
camta1b Takifugu rubripes ENSTRUG00000010941 N 0.000
ENSTSYG00000007714 Tarsius syrichta ENSTSYG00000007714 N 0.000
CAMTA2 Tursiops truncatus ENSTTRG00000001303 N 0.000
CAMTA1 Tursiops truncatus ENSTTRG00000010366 N 0.000
ENSXMAG00000001955 Xiphophorus maculatus ENSXMAG00000001955 N 0.000
ENSXMAG00000018742 Xiphophorus maculatus ENSXMAG00000018742 N 0.000
GD10658 Drosophila simulans FBgn0182425 N 0.000
GJ15050 Drosophila virilis FBgn0202249 N 0.000
Camta Drosophila melanogaster FBgn0259234 N 0.000
GA30460 Drosophila pseudoobscura FBgn0264597 N 0.000
ISCW018640 Ixodes scapularis ISCW018640 N 0.000
ISCW018642 Ixodes scapularis ISCW018642 N 0.000
KGM_18441 Danaus plexippus KGM_18441 N 0.000
L798_01998 Zootermopsis nevadensis L798_01998 N 0.000
PHUM466620 Pediculus humanus PHUM466620 N 0.000
RPRC011455 Rhodnius prolixus RPRC011455 N 0.000
SMAR001697 Strigamia maritima SMAR001697 N 0.000
TC012001 Tribolium castaneum TC012001 N 0.000
YQE_00135 Dendroctonus ponderosae YQE_00135 N 0.000
YQE_00136 Dendroctonus ponderosae YQE_00136 N 0.000
Aan_R005984 Calypte anna Aan_R005984 N 0.000
Afo_R003276 Aptenodytes forsteri Afo_R003276 N 0.000
ENSBTAP00000011330-D1 Bos grunniens ENSBTAP00000011330-D1 N 0.000
ENSP00000306522-D1 Bos grunniens ENSP00000306522-D1 N 0.000
ENSP00000321813 Macaca fascicularis ENSP00000321813 N 0.000
Gfo_R002636 Geospiza fortis Gfo_R002636 N 0.000
Hsal_08954--XP_001120489.1_APIME Harpegnathos saltator Hsal_08954--XP_001120489.1_APIME N 0.000
Myotis_brandtii_CAMTA2_10007480 Myotis brandtii Myotis_brandtii_CAMTA2_10007480 N 0.000
Ogr01933 Ophisaurus gracilis Ogr01933 N 0.000
Pvit_07906 Pogona vitticeps Pvit_07906 N 0.000
e_gw.96.31.1 Branchiostoma floridae e_gw.96.31.1 N 0.000
fgenesh2_pg.scaffold_96000095 Branchiostoma floridae fgenesh2_pg.scaffold_96000095 N 0.000
Sakowv30004245m.g Saccoglossus kowalevskii Sakowv30004245m.g N 0.000
LCUP001199 Lucilia cuprina LCUP001199 N 0.000
camta2 Xenopus tropicalis XB-GENE-1033052 N 0.000
XP_002933905 Xenopus tropicalis XP_002933905 N 0.000
AALB004109 Anopheles albimanus AALB004109 N 0.000
AATE013496 Anopheles atroparvus AATE013496 N 0.000
ACHR000042 Anopheles christyi ACHR000042 N 0.000
ACOM025306 Anopheles coluzzii ACOM025306 N 0.000
ACUA024194 Anopheles culicifacies ACUA024194 N 0.000
ADIR008028 Anopheles dirus ADIR008028 N 0.000
AEPI000476 Anopheles epiroticus AEPI000476 N 0.000
AFAF008223 Anopheles farauti AFAF008223 N 0.000
AFUN008052 Anopheles funestus AFUN008052 N 0.000
AMEC009276 Anopheles melas AMEC009276 N 0.000
AMEM004763 Anopheles merus AMEM004763 N 0.000
AMIN011274 Anopheles minimus AMIN011274 N 0.000
AQUA002064 Anopheles quadriannulatus AQUA002064 N 0.000
ASTEI06908 Anopheles stephensi ASTEI06908 N 0.000
MDOA011429 Musca domestica MDOA011429 N 0.000
PPAI004941 Phlebotomus papatasi PPAI004941 N 0.000