Sjc_0028570 (Schistosoma japonicum)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Sjc_0028570 T016240_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.702 0.800
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.688 0.813
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.688 0.813
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.688 0.813
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.688 0.813
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.688 0.813
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.688 0.800
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.665 0.787
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.665 0.787
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.665 0.787
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.665 0.787
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.665 0.680
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.652 0.467
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.626 0.760
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.523 0.373
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.490 0.400
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000002695 ARID/BRIGHT 410 491

Links

Other ARID/BRIGHT family TFs
Other Schistosoma japonicum TFs

373 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf025327m Mimulus guttatus mgf025327m N
chr3.CM0106.470.nd Lotus japonicus chr3.CM0106.470.nd N
PK11022.1 Cannabis sativa PK11022.1 N
SapurV1A.1357s0040 Salix purpurea SapurV1A.1357s0040 N
SapurV1A.1272s0060 Salix purpurea SapurV1A.1272s0060 N
SapurV1A.0865s0080 Salix purpurea SapurV1A.0865s0080 N
SapurV1A.0865s0070 Salix purpurea SapurV1A.0865s0070 N
SapurV1A.0791s0060 Salix purpurea SapurV1A.0791s0060 N
SapurV1A.0485s0200 Salix purpurea SapurV1A.0485s0200 N
Gorai.011G140300 Gossypium raimondii Gorai.011G140300 N
Gorai.011G140100 Gossypium raimondii Gorai.011G140100 N
evm.TU.supercontig_9.323 Carica papaya evm.TU.supercontig_9.323 N
Eucgr.A00109 Eucalyptus grandis Eucgr.A00109 N
Ciclev10020072m.g Citrus clementina Ciclev10020072m.g N
Aquca_058_00064 Aquilegia coerulea Aquca_058_00064 N
GLYMA13G42100 Glycine max GLYMA13G42100 N
Cucsa.362140 Cucumis sativus Cucsa.362140 N
cassava11920.valid.m1 Manihot esculenta cassava11920.valid.m1 N
Pm007259 Prunus mume Pm007259 N
Cla007135 Citrullus lanatus Cla007135 N
Ca_02696 Cicer arietinum Ca_02696 N
VIT_00s0226g00070 Vitis vinifera VIT_00s0226g00070 N
TCM_019978 Theobroma cacao TCM_019978 N
Solyc08g014030.1 Solanum lycopersicum Solyc08g014030.1 N
PRUPE_ppa1027119mg Prunus persica PRUPE_ppa1027119mg N
POPTR_0017s05450 Populus trichocarpa POPTR_0017s05450 N
POPTR_0007s01650 Populus trichocarpa POPTR_0007s01650 N
PGSC0003DMG400014615 Solanum tuberosum PGSC0003DMG400014615 N
GLYMA15G03290 Glycine max GLYMA15G03290 N