L596_g18623 (Steinernema carpocapsae)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 L596_g18623 T016583_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.785 0.977
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.720 0.802
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.720 0.802
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.720 0.802
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.720 0.802
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.720 0.802
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.720 0.802
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.682 0.756
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.682 0.756
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.682 0.756
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.682 0.756
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.670 0.419
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.659 0.651
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.657 0.767
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.540 0.360
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.326
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L596_g18623.t1 ARID/BRIGHT 210 296
L596_g18623.t2 ARID/BRIGHT 330 416

Links

Other ARID/BRIGHT family TFs
Other Steinernema carpocapsae TFs

373 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GTF2I Homo sapiens ENSG00000263001 D
Afo_R005310 Aptenodytes forsteri Afo_R005310 I
GTF2I Otolemur garnettii ENSOGAG00000029837 I
ENSPANG00000010876 Papio anubis ENSPANG00000010876 I
ENSPPYG00000017484 Pongo abelii ENSPPYG00000017484 I
ENSPSIG00000011811 Pelodiscus sinensis ENSPSIG00000011811 I
GTF2I Pan troglodytes ENSPTRG00000019293 I
GTF2I Pteropus vampyrus ENSPVAG00000005365 I
Gtf2i Rattus norvegicus ENSRNOG00000001479 I
GTF2I Sus scrofa ENSSSCG00000007721 I
GTF2I Taeniopygia guttata ENSTGUG00000003714 I
GTF2I Vicugna pacos ENSVPAG00000008515 I
Aan_R007260 Calypte anna Aan_R007260 I
ENSOARG00000011276 Ovis aries ENSOARG00000011276 I
Alligator_sinensis_CCG003098.5 Alligator sinensis Alligator_sinensis_CCG003098.5 I
Cmyd_10014807 Chelonia mydas Cmyd_10014807 I
ENSBTAP00000012902-D1 Bos grunniens ENSBTAP00000012902-D1 I
ENSP00000322542 Macaca fascicularis ENSP00000322542 I
Gfo_R013538 Geospiza fortis Gfo_R013538 I
Myotis_brandtii_GTF2I_10014287 Myotis brandtii Myotis_brandtii_GTF2I_10014287 I
Pvit_17518 Pogona vitticeps Pvit_17518 I
Tal_R004165 Tyto alba Tal_R004165 I
gtf2i.S Xenopus laevis XB-GENE-1217444 I
XP_002932326 Xenopus tropicalis XP_002932326 I
ENSLACG00000018432 Latimeria chalumnae ENSLACG00000018432 I
ENSAPLG00000005397 Anas platyrhynchos ENSAPLG00000005397 I
GTF2I Bos taurus ENSBTAG00000009780 I
GTF2I Canis familiaris ENSCAFG00000011514 I
GTF2I Callithrix jacchus ENSCJAG00000016182 I
GTF2I Cavia porcellus ENSCPOG00000004071 I
ENSCSAG00000018227 Chlorocebus sabaeus ENSCSAG00000018227 I
ENSDNOG00000000823 Dasypus novemcinctus ENSDNOG00000000823 I
GTF2I Equus caballus ENSECAG00000020289 I
ENSFALG00000007065 Ficedula albicollis ENSFALG00000007065 I
GTF2I Felis catus ENSFCAG00000002617 I
GTF2I Gallus gallus ENSGALG00000021665 I
GTF2I Oryctolagus cuniculus ENSOCUG00000002063 I
GTF2I Loxodonta africana ENSLAFG00000003646 I
GTF2I Meleagris gallopavo ENSMGAG00000002373 I
GTF2I Myotis lucifugus ENSMLUG00000002844 I
GTF2I Macaca mulatta ENSMMUG00000006823 I
GTF2I Monodelphis domestica ENSMODG00000007022 I
ENSMPUG00000016156 Mustela putorius furo ENSMPUG00000016156 I
Gtf2i Mus musculus ENSMUSG00000060261 I
ENSNLEG00000008741 Nomascus leucogenys ENSNLEG00000008741 I
GTF2I Ornithorhynchus anatinus ENSOANG00000012919 I
ENSAMEG00000015241 Ailuropoda melanoleuca ENSAMEG00000015241 I