CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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swsn-7
(
Caenorhabditis elegans
)
ARID/BRIGHT,RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF02257 (RFX_DNA_binding)
IPR001606
IPR003150
WBGene00007433
T016932_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Is expressed in intestine and nervous system. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 6; colorectal cancer; and hepatocellular carcinoma. Orthologous to human ARID2 (AT-rich interaction domain 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C08B11.3
ARID/BRIGHT
26
112
KMAEFYNSLRMFYKRRWNATLKLPHVQGVEVNLYRLYDTVMALGGWQKVAASDKWSDIAEMFGCKDDILCGDHAIKIIYMRYLSKFE
C08B11.3
RFX
620
688
EQLTEKWIRQNCVFEPAMSTPRGELYAAYVDDLRNLYHSMSGSLAMFSGVMKNLYPDVNFRMAQNGIMI
Links
Other
ARID/BRIGHT,RFX
family TFs
Other
Caenorhabditis elegans
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy