swsn-7 (Caenorhabditis elegans)
ARID/BRIGHT,RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID)
PF02257 (RFX_DNA_binding) 		IPR001606
IPR003150 		WBGene00007433 T016932_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Is expressed in intestine and nervous system. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 6; colorectal cancer; and hepatocellular carcinoma. Orthologous to human ARID2 (AT-rich interaction domain 2). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
C08B11.3 ARID/BRIGHT 26 112
C08B11.3 RFX 620 688

Links

Other ARID/BRIGHT,RFX family TFs
Other Caenorhabditis elegans TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE02039 Caenorhabditis remanei CRE02039 N 0.942
CJA02799 Caenorhabditis japonica CJA02799 N 0.922
CBG13351 Caenorhabditis briggsae CBG13351 N 0.922
HPBE_0000100701 Heligmosomoides bakeri HPBE_0000100701 N 0.707
HPLM_0001875601 Haemonchus placei HPLM_0001875601 N 0.705
HCOI01518500 Haemonchus contortus HCOI01518500 N 0.705