Bra022376 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra022376 T018874_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.921 0.921
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.921 0.921
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022376.1-P B3 5 100
Bra022376.1-P B3 272 366

Links

Other B3 family TFs
Other Brassica rapa TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH92 Arabidopsis thaliana AT5G43650 N 0.000
Bo7g065640 Brassica oleracea Bo7g065640 N 0.000
Bra027501 Brassica rapa Bra027501 N 0.000
Bra033690 Brassica rapa Bra033690 N 0.000
BHLH92 Arabidopsis lyrata fgenesh2_kg.390__1__AT5G43650.1 N 0.000
Bostr.3148s0106 Boechera stricta Bostr.3148s0106 N 0.000
Cagra.11654s0002 Capsella grandiflora Cagra.11654s0002 N 0.000
Carubv10027730m.g Capsella rubella Carubv10027730m.g N 0.000