Bra022376 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra022376 T018874_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.921 0.921
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.921 0.921
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022376.1-P B3 5 100
Bra022376.1-P B3 272 366

Links

Other B3 family TFs
Other Brassica rapa TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g116790 Brassica oleracea Bo5g116790 I 0.974
Bo1g115980 Brassica oleracea Bo1g115980 I 0.963
Bra037544 Brassica rapa Bra037544 I 0.963
VRN1 Arabidopsis thaliana AT3G18990 D 0.921
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.921
Bo3g071890 Brassica oleracea Bo3g071890 I 0.916
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.915
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.915
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.915
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.915
Bra001729 Brassica rapa Bra001729 I 0.880
TCM_006971 Theobroma cacao TCM_006971 I 0.787
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.771
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.751
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.746
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.741
Cla010445 Citrullus lanatus Cla010445 I 0.739
evm.TU.supercontig_62.76 Carica papaya evm.TU.supercontig_62.76 I 0.704