Gorai.013G040000 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.013G040000 T023423_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.772 0.772
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.772 0.772
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G040000.1 B3 5 97
Gorai.013G040000.1 B3 246 341
Gorai.013G040000.2 B3 5 97
Gorai.013G040000.2 B3 240 335

Links

Other B3 family TFs
Other Gossypium raimondii TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_006971 Theobroma cacao TCM_006971 I 0.931
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.921
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.904
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.889
Cla010445 Citrullus lanatus Cla010445 I 0.794
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.783
Pm021537 Prunus mume Pm021537 N 0.775
VRN1 Arabidopsis thaliana AT3G18990 D 0.772
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.772
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.772
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.772
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.772
Bo1g115980 Brassica oleracea Bo1g115980 I 0.767
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.767
Bo5g116790 Brassica oleracea Bo5g116790 I 0.762
Bra037544 Brassica rapa Bra037544 I 0.762
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.758
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.758
29851.m002498 Ricinus communis 29851.m002498 I 0.757
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.757
MDP0000238744 Malus domestica MDP0000238744 N 0.757
MDP0000555456 Malus domestica MDP0000555456 N 0.751
Bra022376 Brassica rapa Bra022376 I 0.746
PK10791.1 Cannabis sativa PK10791.1 I 0.746
Bo3g071890 Brassica oleracea Bo3g071890 I 0.743
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.735
GLYMA20G01130 Glycine max GLYMA20G01130 N 0.725
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.725
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.720
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.720
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.716
evm.TU.supercontig_62.76 Carica papaya evm.TU.supercontig_62.76 I 0.714
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.714
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.711
Bra001729 Brassica rapa Bra001729 I 0.701
Lus10012041.g Linum usitatissimum Lus10012041.g N 0.701