PK10791.1 (Cannabis sativa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 PK10791.1 T024335_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.725 0.725
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.725 0.725
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK10791.1 B3 13 106
PK10791.1 B3 306 400

Links

Other B3 family TFs
Other Cannabis sativa TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.836
TCM_006971 Theobroma cacao TCM_006971 I 0.798
MDP0000238744 Malus domestica MDP0000238744 N 0.794
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.783
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.772
MDP0000555456 Malus domestica MDP0000555456 N 0.772
Pm021537 Prunus mume Pm021537 N 0.767
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.762
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.757
GLYMA20G01130 Glycine max GLYMA20G01130 N 0.757
chr2.CM0262.200.nc Lotus japonicus chr2.CM0262.200.nc I 0.751
29851.m002498 Ricinus communis 29851.m002498 I 0.746
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.746
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.746
Lus10012041.g Linum usitatissimum Lus10012041.g N 0.739
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.735
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.735
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.735
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.735
MTR_1g034240 Medicago truncatula MTR_1g034240 N 0.730
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.730
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.730
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.730
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.730
VRN1 Arabidopsis thaliana AT3G18990 D 0.725
Bo1g115980 Brassica oleracea Bo1g115980 I 0.725
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.725
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.725
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.725
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.725
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.725
Bo5g116790 Brassica oleracea Bo5g116790 I 0.720
Bra037544 Brassica rapa Bra037544 I 0.720
GLYMA12G05250 Glycine max GLYMA12G05250 N 0.720
Ca_14825 Cicer arietinum Ca_14825 N 0.720
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.720
GLYMA11G13210 Glycine max GLYMA11G13210 N 0.714
Lus10027940.g Linum usitatissimum Lus10027940.g N 0.710
Ca_13671 Cicer arietinum Ca_13671 N 0.704
chr3.LjT23H01.130.nc Lotus japonicus chr3.LjT23H01.130.nc N 0.704