Bra037544 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra037544 T018947_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.947 0.947
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.947 0.947
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037544.1-P B3 5 100
Bra037544.1-P B3 245 339

Links

Other B3 family TFs
Other Brassica rapa TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g115980 Brassica oleracea Bo1g115980 I 0.989
Bo5g116790 Brassica oleracea Bo5g116790 I 0.989
Bra022376 Brassica rapa Bra022376 I 0.963
VRN1 Arabidopsis thaliana AT3G18990 D 0.947
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.947
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.942
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.942
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.942
Thhalv10021075m.g Eutrema salsugineum Thhalv10021075m.g I 0.942
Bo3g071890 Brassica oleracea Bo3g071890 I 0.937
Bra001729 Brassica rapa Bra001729 I 0.862
TCM_006971 Theobroma cacao TCM_006971 I 0.809
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.783
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.767
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.762
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.762
evm.TU.supercontig_62.76 Carica papaya evm.TU.supercontig_62.76 I 0.720
PK10791.1 Cannabis sativa PK10791.1 I 0.720
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.714
Ciclev10028642m.g Citrus clementina Ciclev10028642m.g I 0.714
orange1.1g016655m.g Citrus sinensis orange1.1g016655m.g I 0.714
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.709
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.704
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.704
SapurV1A.0090s0340 Salix purpurea SapurV1A.0090s0340 I 0.704
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.704