POPTR_0005s25720 (Populus trichocarpa)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 POPTR_0005s25720 T024712_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.770 0.770
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s25720.1 BBR 1 335
POPTR_0005s25720.2 BBR 1 335
POPTR_0005s25720.3 BBR 1 335
POPTR_0005s25720.4 BBR 1 335

Links

Other BBR family TFs
Other Populus trichocarpa TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EEL_0001031901 Elaeophora elaphi EEL_0001031901 N 0.000
TELCIR_22112 Teladorsagia circumcincta TELCIR_22112 N 0.000
SVUK_0000379901 Strongylus vulgaris SVUK_0000379901 N 0.000
SSLN_0001714501 Schistocephalus solidus SSLN_0001714501 N 0.000
OFLC_0001019101 Onchocerca flexuosa OFLC_0001019101 N 0.000
nOo.2.0.1.g10764 Onchocerca ochengi nOo.2.0.1.g10764 N 0.000
nAv.1.0.1.g00376 Acanthocheilonema viteae nAv.1.0.1.g00376 N 0.000
Hba_13069 Heterorhabditis bacteriophora Hba_13069 N 0.000
genemark-nMf.1.1.scaf04821-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf04821-processed-gene-0.1 N 0.000
POU4F2 Takifugu rubripes ENSTRUG00000001400 N 0.000
BTMF_0000932701 Brugia timori BTMF_0000932701 N 0.000
ANCCAN_24295 Ancylostoma caninum ANCCAN_24295 N 0.000
PPAI005468 Phlebotomus papatasi PPAI005468 N 0.000
Gfo_R011132 Geospiza fortis Gfo_R011132 N 0.000
Afo_R005791 Aptenodytes forsteri Afo_R005791 N 0.000
MESCA000014 Megaselia scalaris MESCA000014 N 0.000
GL14745 Drosophila persimilis FBgn0152349 N 0.000
GI15417 Drosophila mojavensis FBgn0138166 N 0.000