CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10000273m.g
(
Eutrema salsugineum
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
Thhalv10000273m.g
T024900_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10000273m
BBR
1
291
MENGGQYENGRYKPDHLKGAQSTMWNMMPQHQIKEQHNALVMNKKIMSILAERDAAVQERNQAVSAKREAVAARDEALQQRDKALSERDKALIERDTAFAALQHHENSLNFALSGGKQRYDVDDGFSFGETHKPDVFPITTIPAEKKVSKRKKQGQAKGKKVGEDLNRGVAAPGKKSRTDWDSNDVGLNLVTFDETTMPVPVCTCTGSAHQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRVGGRKMSGNVFSRLLSRLAAEGYELSCPVDLKDYWARHGTNRYITIK
Links
Other
BBR
family TFs
Other
Eutrema salsugineum
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ocbimv22014894m.g
Octopus bimaculoides
Ocbimv22014894m.g
I
1.000
Thhalv10025867m.g
Eutrema salsugineum
Thhalv10025867m.g
I
0.704
BPC4
Arabidopsis thaliana
AT2G21240
N
0.736
Bo4g145820
Brassica oleracea
Bo4g145820
N
0.748
Bra030308
Brassica rapa
Bra030308
N
0.743
BPC4
Arabidopsis lyrata
fgenesh2_kg.4__42__AT2G21240.1
N
0.755
Bostr.5022s0111
Boechera stricta
Bostr.5022s0111
N
0.763
Cagra.2961s0028
Capsella grandiflora
Cagra.2961s0028
N
0.759
Carubv10023579m.g
Capsella rubella
Carubv10023579m.g
N
0.759