Thhalv10025867m.g (Eutrema salsugineum)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Thhalv10025867m.g T024906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.777 0.777
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.777 0.777
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10025867m BBR 1 295

Links

Other BBR family TFs
Other Eutrema salsugineum TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
Bostr.25542s0071 Boechera stricta Bostr.25542s0071 I 0.876
BPC5 Arabidopsis thaliana AT4G38910 D 0.842
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I 0.836
Bo7g119540 Brassica oleracea Bo7g119540 I 0.792
BPC5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000068 I 0.785
Bra011886 Brassica rapa Bra011886 N 0.779
Bo1g002230 Brassica oleracea Bo1g002230 N 0.766
Carubv10023579m.g Capsella rubella Carubv10023579m.g N 0.748
Cagra.2961s0028 Capsella grandiflora Cagra.2961s0028 N 0.748
Bostr.5022s0111 Boechera stricta Bostr.5022s0111 N 0.748
Bra033583 Brassica rapa Bra033583 N 0.743
Bra010720 Brassica rapa Bra010720 N 0.741
BPC4 Arabidopsis lyrata fgenesh2_kg.4__42__AT2G21240.1 N 0.741
BPC4 Arabidopsis thaliana AT2G21240 N 0.718
Bo3g149650 Brassica oleracea Bo3g149650 N 0.712
Thhalv10000273m.g Eutrema salsugineum Thhalv10000273m.g N 0.704