gene27341-v1.0-hybrid (Fragaria vesca)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 gene27341-v1.0-hybrid T028312_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna27341.1-v1.0-hybrid BED ZF 29 77

Links

Other BED ZF family TFs
Other Fragaria vesca TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava7664.valid.m1 Manihot esculenta cassava7664.valid.m1 N 0.818
PK12364.1 Cannabis sativa PK12364.1 N 0.909
Thhalv10020233m.g Eutrema salsugineum Thhalv10020233m.g N 0.750
SapurV1A.0026s0130 Salix purpurea SapurV1A.0026s0130 N 0.886
SapurV1A.0020s0660 Salix purpurea SapurV1A.0020s0660 N 0.886
Lus10005558.g Linum usitatissimum Lus10005558.g N 0.909
Gorai.007G331900 Gossypium raimondii Gorai.007G331900 N 0.932
Gorai.004G271300 Gossypium raimondii Gorai.004G271300 N 0.841
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.714
Carubv10013145m.g Capsella rubella Carubv10013145m.g N 0.750
Cagra.0007s0024 Capsella grandiflora Cagra.0007s0024 N 0.750
Bostr.28625s0227 Boechera stricta Bostr.28625s0227 N 0.750
Aquca_039_00001 Aquilegia coerulea Aquca_039_00001 N 0.721
Cucsa.057910 Cucumis sativus Cucsa.057910 N 0.955
cassava7665.valid.m1 Manihot esculenta cassava7665.valid.m1 N 0.818
Bo1g129970 Brassica oleracea Bo1g129970 N 0.750
Pm014562 Prunus mume Pm014562 N 0.714
Pm011252 Prunus mume Pm011252 N 0.932
VIT_19s0014g00320 Vitis vinifera VIT_19s0014g00320 N 0.909
TCM_032128 Theobroma cacao TCM_032128 N 0.932
Solyc10g007470.2 Solanum lycopersicum Solyc10g007470.2 N 0.909
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.714
PRUPE_ppa002416mg Prunus persica PRUPE_ppa002416mg N 0.932
POPTR_0011s10500 Populus trichocarpa POPTR_0011s10500 N 0.909
POPTR_0001s39240 Populus trichocarpa POPTR_0001s39240 N 0.886
PGSC0003DMG400021296 Solanum tuberosum PGSC0003DMG400021296 N 0.909
GLYMA15G27362 Glycine max GLYMA15G27362 N 0.977
GLYMA09G15135 Glycine max GLYMA09G15135 N 0.977
Bo9g044150 Brassica oleracea Bo9g044150 N 0.705