CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb00686
(
Panicum virgatum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Pavir.Eb00686
T028466_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb00686.1.p
BED ZF
1
42
MPDVNKKQYLKSNYCDKIYHGGITRIKYHLGKVPKCGVAKCG
Links
Other
BED ZF
family TFs
Other
Panicum virgatum
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
pax6.L
Xenopus laevis
XB-GENE-865046
I
MDOA004921
Musca domestica
MDOA004921
N
ECPE_0000273401
Echinostoma caproni
ECPE_0000273401
N
PXEA_0001865101
Protopolystoma xenopodis
PXEA_0001865101
N
SPER_0001686401
Spirometra erinaceieuropaei
SPER_0001686401
N
SSLN_0001114201
Schistocephalus solidus
SSLN_0001114201
N