Pavir.Ib03527 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Ib03527 T028528_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib03527.1.p BED ZF 601 658
Pavir.Ib03527.2.p BED ZF 601 658

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SOX17 Homo sapiens ENSG00000164736 D 0.000
SOX18 Homo sapiens ENSG00000203883 D 0.000
Sox17 Mus musculus ENSMUSG00000025902 D 0.000
Sox18 Mus musculus ENSMUSG00000046470 D 0.000
Sox21b Drosophila melanogaster FBgn0042630 D 0.000
AAEL000893 Aedes aegypti AAEL000893 I 0.000
ADAC006830 Anopheles darlingi ADAC006830 I 0.000
AGAP010919 Anopheles gambiae AGAP010919 I 0.000
AGAP010922 Anopheles gambiae AGAP010922 I 0.000
DAPPUDRAFT_37091 Daphnia pulex DAPPUDRAFT_37091 I 0.000
SOX18 Anolis carolinensis ENSACAG00000006428 I 0.000
ENSAMEG00000011673 Ailuropoda melanoleuca ENSAMEG00000011673 I 0.000
ENSAMXG00000002348 Astyanax mexicanus ENSAMXG00000002348 I 0.000
ENSAMXG00000017508 Astyanax mexicanus ENSAMXG00000017508 I 0.000
SOX17 Bos taurus ENSBTAG00000005748 I 0.000
SOX18 Bos taurus ENSBTAG00000011662 I 0.000
SOX17 Canis familiaris ENSCAFG00000025327 I 0.000
SOX18 Canis familiaris ENSCAFG00000029278 I 0.000
ENSCING00000001019 Ciona intestinalis ENSCING00000001019 I 0.000
SOX17 Callithrix jacchus ENSCJAG00000016710 I 0.000
SOX17 Cavia porcellus ENSCPOG00000000892 I 0.000
ENSCPOG00000024123 Cavia porcellus ENSCPOG00000024123 I 0.000
ENSCSAG00000014667 Chlorocebus sabaeus ENSCSAG00000014667 I 0.000
ENSCSAVG00000008424 Ciona savignyi ENSCSAVG00000008424 I 0.000
sox8b Danio rerio ENSDARG00000037782 I 0.000
sox18 Danio rerio ENSDARG00000058598 I 0.000
sox17 Danio rerio ENSDARG00000101717 I 0.000
ENSDNOG00000032973 Dasypus novemcinctus ENSDNOG00000032973 I 0.000
ENSDNOG00000044362 Dasypus novemcinctus ENSDNOG00000044362 I 0.000
ENSETEG00000007859 Echinops telfairi ENSETEG00000007859 I 0.000
SOX17 Echinops telfairi ENSETEG00000016915 I 0.000
ENSFALG00000006430 Ficedula albicollis ENSFALG00000006430 I 0.000
ENSFALG00000010339 Ficedula albicollis ENSFALG00000010339 I 0.000
sox17 Gasterosteus aculeatus ENSGACG00000004347 I 0.000
sox18 Gasterosteus aculeatus ENSGACG00000010505 I 0.000
ENSGALG00000026582 Gallus gallus ENSGALG00000026582 I 0.000
ENSGALG00000028422 Gallus gallus ENSGALG00000028422 I 0.000
SOX17 Gorilla gorilla ENSGGOG00000023175 I 0.000
ENSGMOG00000003535 Gadus morhua ENSGMOG00000003535 I 0.000
ENSGMOG00000005913 Gadus morhua ENSGMOG00000005913 I 0.000
ENSLACG00000005072 Latimeria chalumnae ENSLACG00000005072 I 0.000
SOX17 Loxodonta africana ENSLAFG00000028829 I 0.000
ENSLOCG00000005401 Lepisosteus oculatus ENSLOCG00000005401 I 0.000
ENSLOCG00000005646 Lepisosteus oculatus ENSLOCG00000005646 I 0.000
ENSMEUG00000011391 Macropus eugenii ENSMEUG00000011391 I 0.000
ENSMEUG00000016410 Macropus eugenii ENSMEUG00000016410 I 0.000
ENSMICG00000000709 Microcebus murinus ENSMICG00000000709 I 0.000
SOX17 Myotis lucifugus ENSMLUG00000010149 I 0.000
ENSMMUG00000000326 Macaca mulatta ENSMMUG00000000326 I 0.000
ENSMMUG00000015560 Macaca mulatta ENSMMUG00000015560 I 0.000
ENSMODG00000009348 Monodelphis domestica ENSMODG00000009348 I 0.000
SOX18 Monodelphis domestica ENSMODG00000017052 I 0.000
ENSMPUG00000010506 Mustela putorius furo ENSMPUG00000010506 I 0.000
ENSNLEG00000001085 Nomascus leucogenys ENSNLEG00000001085 I 0.000
SOX18 Otolemur garnettii ENSOGAG00000032118 I 0.000
SOX17 Otolemur garnettii ENSOGAG00000034932 I 0.000
ENSONIG00000000364 Oreochromis niloticus ENSONIG00000000364 I 0.000
ENSONIG00000006141 Oreochromis niloticus ENSONIG00000006141 I 0.000
SOX17 Ochotona princeps ENSOPRG00000007021 I 0.000
sox17 Oryzias latipes ENSORLG00000011542 I 0.000
sox18 Oryzias latipes ENSORLG00000016736 I 0.000
ENSPANG00000017685 Papio anubis ENSPANG00000017685 I 0.000
ENSPANG00000024134 Papio anubis ENSPANG00000024134 I 0.000
ENSPFOG00000013239 Poecilia formosa ENSPFOG00000013239 I 0.000
ENSPFOG00000013867 Poecilia formosa ENSPFOG00000013867 I 0.000
ENSPPYG00000018593 Pongo abelii ENSPPYG00000018593 I 0.000
ENSPSIG00000009637 Pelodiscus sinensis ENSPSIG00000009637 I 0.000
SOX17 Pan troglodytes ENSPTRG00000020254 I 0.000
SOX17 Pteropus vampyrus ENSPVAG00000009339 I 0.000
SOX18 Pteropus vampyrus ENSPVAG00000014320 I 0.000
Sox18 Rattus norvegicus ENSRNOG00000016248 I 0.000
Sox17 Rattus norvegicus ENSRNOG00000027357 I 0.000
ENSSHAG00000011351 Sarcophilus harrisii ENSSHAG00000011351 I 0.000
ENSSHAG00000016686 Sarcophilus harrisii ENSSHAG00000016686 I 0.000
SOX17 Sus scrofa ENSSSCG00000006256 I 0.000
ENSSTOG00000008722 Ictidomys tridecemlineatus ENSSTOG00000008722 I 0.000
ENSSTOG00000022517 Ictidomys tridecemlineatus ENSSTOG00000022517 I 0.000
ENSSTOG00000028214 Ictidomys tridecemlineatus ENSSTOG00000028214 I 0.000
SOX18 Taeniopygia guttata ENSTGUG00000007265 I 0.000
SOX17 Taeniopygia guttata ENSTGUG00000011034 I 0.000
sox18 Tetraodon nigroviridis ENSTNIG00000011338 I 0.000
sox7 Tetraodon nigroviridis ENSTNIG00000016335 I 0.000
sox17 Tetraodon nigroviridis ENSTNIG00000017129 I 0.000
sox18 Takifugu rubripes ENSTRUG00000000777 I 0.000
sox7 Takifugu rubripes ENSTRUG00000006389 I 0.000
sox17 Takifugu rubripes ENSTRUG00000007618 I 0.000
SOX17 Vicugna pacos ENSVPAG00000005064 I 0.000
ENSXMAG00000002084 Xiphophorus maculatus ENSXMAG00000002084 I 0.000
ENSXMAG00000009334 Xiphophorus maculatus ENSXMAG00000009334 I 0.000
GF25205 Drosophila ananassae FBgn0102197 I 0.000
GG13734 Drosophila erecta FBgn0105997 I 0.000
GI11537 Drosophila mojavensis FBgn0134297 I 0.000
GM24556 Drosophila sechellia FBgn0179419 I 0.000
GD12629 Drosophila simulans FBgn0184356 I 0.000
GJ11556 Drosophila virilis FBgn0198814 I 0.000
GK17144 Drosophila willistoni FBgn0219143 I 0.000
GE20028 Drosophila yakuba FBgn0237353 I 0.000
GA23525 Drosophila pseudoobscura FBgn0244926 I 0.000
HelroG147226 Helobdella robusta HelroG147226 I 0.000
HelroG62765 Helobdella robusta HelroG62765 I 0.000
HMEL002856 Heliconius melpomene HMEL002856 I 0.000
HMEL003506 Heliconius melpomene HMEL003506 I 0.000
NEMVEDRAFT_v1g235335 Nematostella vectensis NEMVEDRAFT_v1g235335 I 0.000
PHUM136100 Pediculus humanus PHUM136100 I 0.000
SMAR002458 Strigamia maritima SMAR002458 I 0.000
SPU_014170 Strongylocentrotus purpuratus SPU_014170 I 0.000
TC013165 Tribolium castaneum TC013165 I 0.000
Alligator_sinensis_CCG018598.1 Alligator sinensis Alligator_sinensis_CCG018598.1 I 0.000
ENSP00000297316 Macaca fascicularis ENSP00000297316 I 0.000
Ogr14928 Ophisaurus gracilis Ogr14928 I 0.000
Pvit_15304 Pogona vitticeps Pvit_15304 I 0.000
estExt_fgenesh2_pg.C_1660078 Branchiostoma floridae estExt_fgenesh2_pg.C_1660078 I 0.000
estExt_fgenesh2_pg.C_4740022 Branchiostoma floridae estExt_fgenesh2_pg.C_4740022 I 0.000
estExt_fgenesh2_pg.C_6920002 Branchiostoma floridae estExt_fgenesh2_pg.C_6920002 I 0.000
AAT71996 Xenopus tropicalis AAT71996 I 0.000
sox18 Xenopus tropicalis XB-GENE-483233 I 0.000
sox17a Xenopus tropicalis XB-GENE-484295 I 0.000
sox18.S Xenopus laevis XB-GENE-6251810 I 0.000
sox17a.S Xenopus laevis XB-GENE-6255435 I 0.000
sox18.L Xenopus laevis XB-GENE-864957 I 0.000
sox17a.L Xenopus laevis XB-GENE-865067 I 0.000
AALB009869 Anopheles albimanus AALB009869 I 0.000
AARA005389 Anopheles arabiensis AARA005389 I 0.000
AATE000638 Anopheles atroparvus AATE000638 I 0.000
AATE010587 Anopheles atroparvus AATE010587 I 0.000
ACOM022795 Anopheles coluzzii ACOM022795 I 0.000
ACUA014541 Anopheles culicifacies ACUA014541 I 0.000
ADIR005629 Anopheles dirus ADIR005629 I 0.000
AEPI003627 Anopheles epiroticus AEPI003627 I 0.000
AFAF019648 Anopheles farauti AFAF019648 I 0.000
AFAF020279 Anopheles farauti AFAF020279 I 0.000
AFUN010200 Anopheles funestus AFUN010200 I 0.000