Pavir.Ib03527 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Ib03527 T028528_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib03527.1.p BED ZF 601 658
Pavir.Ib03527.2.p BED ZF 601 658

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si000761m.g Setaria italica Si000761m.g N 0.932
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.932
Sb09g016200 Sorghum bicolor Sb09g016200 N 0.818
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.795
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.795
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.795
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.795
OB08G27850 Oryza brachyantha OB08G27850 N 0.795
Si000431m.g Setaria italica Si000431m.g N 0.795
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.795
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.795
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.795
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.795
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.795
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.795
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.795
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.773
OB08G27840 Oryza brachyantha OB08G27840 N 0.773
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.773
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.773
Si034159m.g Setaria italica Si034159m.g N 0.773
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.773
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.773
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.773
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.773
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.773
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.750
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.750
TCM_027266 Theobroma cacao TCM_027266 N 0.750
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.750
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.750
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.750
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.727
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.727
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.727
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.727
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.727
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.727
mgf025287m Mimulus guttatus mgf025287m N 0.727
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.727
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.727
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.727
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.727
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.727
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.727
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.727
PK27100.1 Cannabis sativa PK27100.1 N 0.727
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N 0.705
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.705
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.705
OS05G0583200 Oryza sativa OS05G0583200 N 0.705
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.705
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.705
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.705
TCM_038144 Theobroma cacao TCM_038144 N 0.705
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.705
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.705
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.705
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.705
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.705
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.705
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.705
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.705
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.705
MDP0000394762 Malus domestica MDP0000394762 N 0.705
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.705
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.705