gene15718-v1.0-hybrid (Fragaria vesca)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 gene15718-v1.0-hybrid T028290_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna15718.1-v1.0-hybrid BED ZF 120 177

Links

Other BED ZF family TFs
Other Fragaria vesca TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.909
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.909
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.909
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.909
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.909
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.909
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.864
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.864
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.864
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.864
TCM_027266 Theobroma cacao TCM_027266 N 0.864
Pm013703 Prunus mume Pm013703 N 0.864
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.864
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.864
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.864
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.864
mgf025287m Mimulus guttatus mgf025287m N 0.841
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.841
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.841
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.841
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.841
PK27100.1 Cannabis sativa PK27100.1 N 0.841
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.818
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.818
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.818
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.818
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.818
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.818
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.818
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.818
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.818
Bo4g107870 Brassica oleracea Bo4g107870 N 0.795
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.795
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.795
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.795
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.795
OB08G27850 Oryza brachyantha OB08G27850 N 0.795
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.795
Si000431m.g Setaria italica Si000431m.g N 0.795
Si000761m.g Setaria italica Si000761m.g N 0.795
TCM_038144 Theobroma cacao TCM_038144 N 0.795
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.795
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.795
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.795
MDP0000394762 Malus domestica MDP0000394762 N 0.795
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.795
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.795
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.795
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.795
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.795
GLYMA07G03280 Glycine max GLYMA07G03280 N 0.773
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.773
OB08G27840 Oryza brachyantha OB08G27840 N 0.773
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.773
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.773
Si034159m.g Setaria italica Si034159m.g N 0.773
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.773
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.773
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.773
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.773
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.773
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.773
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.773
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.767
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.750
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.750
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.750
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.750
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.750
MDP0000197332 Malus domestica MDP0000197332 N 0.750
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.744
gene31106-v1.0-hybrid Fragaria vesca gene31106-v1.0-hybrid N 0.744
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.738
Bo6g067130 Brassica oleracea Bo6g067130 N 0.727
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.727
OS05G0583200 Oryza sativa OS05G0583200 N 0.727
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.727
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.727
mgf010516m Mimulus guttatus mgf010516m N 0.727
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.727
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.727
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.727
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.727
PK28412.1 Cannabis sativa PK28412.1 N 0.727
Bo4g137780 Brassica oleracea Bo4g137780 N 0.705
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.705
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.705
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.705
Sb09g016200 Sorghum bicolor Sb09g016200 N 0.705
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.705
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.705
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.705
Cucsa.096030 Cucumis sativus Cucsa.096030 N 0.705
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.705
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.705