POPTR_0004s12810 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0004s12810 T027358_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s12810.1 BED ZF 206 256

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.953
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.886
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.884
mgf025287m Mimulus guttatus mgf025287m N 0.884
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.884
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.884
PK27100.1 Cannabis sativa PK27100.1 N 0.884
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.860
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.860
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.860
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.860
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.860
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.860
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.837
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.837
TCM_038144 Theobroma cacao TCM_038144 N 0.837
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.837
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.837
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.837
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.837
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.837
MDP0000394762 Malus domestica MDP0000394762 N 0.837
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.818
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.818
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.818
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.818
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.814
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.814
Bo4g137780 Brassica oleracea Bo4g137780 N 0.791
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.791
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.791
MDP0000197332 Malus domestica MDP0000197332 N 0.773
HAT Arabidopsis thaliana AT3G42170 N 0.767
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.767
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.767
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.767
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.767
Pm013703 Prunus mume Pm013703 N 0.767
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.767
Bostr.0556s0643 Boechera stricta Bostr.0556s0643 N 0.767
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.767
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.767
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.767
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.744
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.744
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.744
OB08G27840 Oryza brachyantha OB08G27840 N 0.744
Si034159m.g Setaria italica Si034159m.g N 0.744
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.744
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.744
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.744
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.744
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.744
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.744
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.744
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.744
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.744
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.744
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.727
Bo4g107870 Brassica oleracea Bo4g107870 N 0.721
GLYMA16G32921 Glycine max GLYMA16G32921 N 0.721
OB08G27850 Oryza brachyantha OB08G27850 N 0.721
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.721
Si000431m.g Setaria italica Si000431m.g N 0.721
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.721
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.721
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.721
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.721
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.721
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.721
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.705