POPTR_0001s20900 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0001s20900 T027344_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s20900.1 BED ZF 39 96
POPTR_0001s20900.2 BED ZF 39 96
POPTR_0001s20900.3 BED ZF 39 96

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 1.000
cassava11655.m1 Manihot esculenta cassava11655.m1 N 1.000
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 1.000
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 1.000
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.955
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.909
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.909
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.909
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.909
TCM_027266 Theobroma cacao TCM_027266 N 0.886
mgf025287m Mimulus guttatus mgf025287m N 0.886
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.886
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.886
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.886
PK27100.1 Cannabis sativa PK27100.1 N 0.886
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.864
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.864
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.864
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.864
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.864
Pm013703 Prunus mume Pm013703 N 0.864
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.864
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.864
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.864
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.864
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.864
Bo4g107870 Brassica oleracea Bo4g107870 N 0.841
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.841
TCM_038144 Theobroma cacao TCM_038144 N 0.841
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.841
MDP0000394762 Malus domestica MDP0000394762 N 0.841
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.818
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.818
GLYMA07G03280 Glycine max GLYMA07G03280 N 0.795
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.795
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.795
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.795
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.795
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.795
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.795
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.795
MDP0000197332 Malus domestica MDP0000197332 N 0.795
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.795
PK28412.1 Cannabis sativa PK28412.1 N 0.795
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.791
Bo6g067130 Brassica oleracea Bo6g067130 N 0.773
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.773
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.773
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.773
OB08G27850 Oryza brachyantha OB08G27850 N 0.773
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.773
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.773
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.773
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.773
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.773
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.773
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.773
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.773
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.773
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.767
OB08G27840 Oryza brachyantha OB08G27840 N 0.750
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.750
Si000431m.g Setaria italica Si000431m.g N 0.750
Si000761m.g Setaria italica Si000761m.g N 0.750
Si034159m.g Setaria italica Si034159m.g N 0.750
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.750
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.750
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.750
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.750
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.750
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.750
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.750
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.750
SapurV1A.0197s0170 Salix purpurea SapurV1A.0197s0170 N 0.750
Thhalv10022530m.g Eutrema salsugineum Thhalv10022530m.g N 0.750
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.738
Bo4g137780 Brassica oleracea Bo4g137780 N 0.727
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.727
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.727
GLYMA13G44351 Glycine max GLYMA13G44351 N 0.727
POPTR_0018s12680 Populus trichocarpa POPTR_0018s12680 N 0.727
mgf010516m Mimulus guttatus mgf010516m N 0.727
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.727
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.727
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.727
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.727
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.727
Sb09g016200 Sorghum bicolor Sb09g016200 N 0.705
Cucsa.096030 Cucumis sativus Cucsa.096030 N 0.705
Thhalv10002435m.g Eutrema salsugineum Thhalv10002435m.g N 0.705