Pavir.J31170 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J31170 T028631_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J31170.1.p BED ZF 84 139
Pavir.J31170.2.p BED ZF 84 139
Pavir.J31170.3.p BED ZF 84 139
Pavir.J31170.4.p BED ZF 84 139

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si000431m.g Setaria italica Si000431m.g N 0.977
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.977
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.977
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.955
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.955
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.955
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.955
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.955
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.955
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.932
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.932
OB08G27840 Oryza brachyantha OB08G27840 N 0.932
OB08G27850 Oryza brachyantha OB08G27850 N 0.932
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.932
Si034159m.g Setaria italica Si034159m.g N 0.932
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.932
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.932
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.886
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.886
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.886
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.886
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.886
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N 0.864
OS05G0583200 Oryza sativa OS05G0583200 N 0.864
BGIOSGA009862 Oryza indica BGIOSGA009862 N 0.841
BGIOSGA018468 Oryza indica BGIOSGA018468 N 0.841
BGIOSGA020445 Oryza indica BGIOSGA020445 N 0.841
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.841
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N 0.841
OB03G40190 Oryza brachyantha OB03G40190 N 0.841
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N 0.841
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N 0.841
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N 0.841
OS03G0733400 Oryza sativa OS03G0733400 N 0.841
BRADI3G16050 Brachypodium distachyon BRADI3G16050 N 0.810
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N 0.810
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.795
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.795
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.795
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.773
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.773
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.773
MLOC_42818 Hordeum vulgare MLOC_42818 N 0.773
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N 0.773
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.773
Si000761m.g Setaria italica Si000761m.g N 0.773
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N 0.773
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N 0.773
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N 0.773
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N 0.773
TRIUR3_10927 Triticum urartu TRIUR3_10927 N 0.773
mgf025287m Mimulus guttatus mgf025287m N 0.773
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.773
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.773
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N 0.773
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N 0.773
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.773
MDP0000394762 Malus domestica MDP0000394762 N 0.773
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.773
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N 0.773
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.773
PK27100.1 Cannabis sativa PK27100.1 N 0.773
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N 0.767
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N 0.750
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.750
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.750
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.750
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.750
TCM_038144 Theobroma cacao TCM_038144 N 0.750
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.750
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.750
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.750
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N 0.750
Carubv10019720m.g Capsella rubella Carubv10019720m.g N 0.750
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.750
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.750
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.750
TCM_027266 Theobroma cacao TCM_027266 N 0.727
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N 0.727
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.727
MDP0000197332 Malus domestica MDP0000197332 N 0.727
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N 0.721
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N 0.721
Bo4g107870 Brassica oleracea Bo4g107870 N 0.705
Bo4g137780 Brassica oleracea Bo4g137780 N 0.705
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N 0.705
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N 0.705
Si000401m.g Setaria italica Si000401m.g N 0.705
Pm013703 Prunus mume Pm013703 N 0.705
Cucsa.036140 Cucumis sativus Cucsa.036140 N 0.705
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N 0.705
Carubv10008021m.g Capsella rubella Carubv10008021m.g N 0.705
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.705
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N 0.705
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N 0.705
Lus10032337.g Linum usitatissimum Lus10032337.g N 0.705
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.705