CGI_10025278 (Crassostrea gigas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 CGI_10025278 T032146_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arntl
M01751_2.00 		Mus musculus
NCACGTGAYN
NRTCACGTGN		 PBM
Weirauch et al.(2014)
pTH5064 		0.858 0.741
ARNTL
M02787_2.00 		Homo sapiens
GTCACGTGAC
GTCACGTGAC		 SELEX
Jolma et al.(2013)
ARNTL_1 		0.858 0.741
ARNTL
M04124_2.00 		Homo sapiens
RDCACGTGHN
NDCACGTGHY		 SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX 		0.858 0.741
ARNTL
M08725_2.00 		Homo sapiens
NVDCACGTGBN
NVCACGTGHBN		 Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A 		0.858 0.741
Arntl
M08776_2.00 		Mus musculus
VCACGTGMN
NKCACGTGB		 Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A 		0.858 0.741
Arntl
M09478_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860 		0.858 0.741
Arntl
M09889_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_01 		0.858 0.741
ARNTL
M09841_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_Q6 		0.858 0.741
ARNTL
M04125_2.00 		Homo sapiens
NDCACRTGHY
RDCAYGTGHN		 SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX 		0.858 0.741
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC42110 bHLH 69 122

Links

Other bHLH family TFs
Other Crassostrea gigas TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_2BL_00608F8D6 Triticum aestivum Traes_2BL_00608F8D6 N
OMERI01G40940 Oryza meridionalis OMERI01G40940 N
OPUNC01G43070 Oryza punctata OPUNC01G43070 N
ORGLA01G0380200 Oryza glaberrima ORGLA01G0380200 N
ORUFI01G47560 Oryza rufipogon ORUFI01G47560 N
OS01G0952800 Oryza sativa OS01G0952800 N
Sb03g046090 Sorghum bicolor Sb03g046090 N
Si002720m.g Setaria italica Si002720m.g N
Traes_2AL_ACBAA6A31 Triticum aestivum Traes_2AL_ACBAA6A31 N
OLONG_006457 Oryza longistaminata OLONG_006457 N
Traes_2DL_865346DA2 Triticum aestivum Traes_2DL_865346DA2 N
Traes_3AL_95403ABBA Triticum aestivum Traes_3AL_95403ABBA N
TRAES3BF136000020CFD_g Triticum aestivum TRAES3BF136000020CFD_g N
TRIUR3_18175 Triticum urartu TRIUR3_18175 N
TRIUR3_22165 Triticum urartu TRIUR3_22165 N
Pavir.Ea04053 Panicum virgatum Pavir.Ea04053 N
Pavir.J04771 Panicum virgatum Pavir.J04771 N
AC193786.3_FG005 Zea mays AC193786.3_FG005 N
OGLUM01G48440 Oryza glumaepatula OGLUM01G48440 N
OBART01G44150 Oryza barthii OBART01G44150 N
OB01G53300 Oryza brachyantha OB01G53300 N
MLOC_72280 Hordeum vulgare MLOC_72280 N
MLOC_67053 Hordeum vulgare MLOC_67053 N
MLOC_36351 Hordeum vulgare MLOC_36351 N
LPERR01G38470 Leersia perrieri LPERR01G38470 N
GRMZM2G057413 Zea mays GRMZM2G057413 N
F775_31854 Aegilops tauschii F775_31854 N
F775_19529 Aegilops tauschii F775_19529 N
BRADI3G43250 Brachypodium distachyon BRADI3G43250 N
BRADI2G61050 Brachypodium distachyon BRADI2G61050 N
BRADI2G60970 Brachypodium distachyon BRADI2G60970 N
BGIOSGA005178 Oryza indica BGIOSGA005178 N
BGIOSGA000097 Oryza indica BGIOSGA000097 N