CGI_10026909 (Crassostrea gigas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 CGI_10026909 T032148_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tfap4
M01717_2.00 		Mus musculus
VHCABVYGB
VCRBVTGDB		 PBM
Weirauch et al.(2014)
pTH5067 		0.903 0.885
TFAP4
M02776_2.00 		Homo sapiens
AWCAGCTGWY
RWCAGCTGWT		 SELEX
Jolma et al.(2013)
TFAP4_1 		0.903 0.885
TFAP4
M02777_2.00 		Homo sapiens
AWCAGCTGWT
AWCAGCTGWT		 SELEX
Jolma et al.(2013)
TFAP4_2 		0.903 0.885
TFAP4
M04066_2.00 		Homo sapiens
VHCAKVTGDB
VHCABMTGDB		 SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_1 		0.903 0.885
TFAP4
M04067_2.00 		Homo sapiens
VWCAGCTGWB
VWCAGCTGWB		 SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_2 		0.903 0.885
TFAP4
M04070_2.00 		Homo sapiens
RHCAYVTGDB
VHCABRTGDY		 SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_1 		0.903 0.885
TFAP4
M04071_2.00 		Homo sapiens
VHCAGCTGDB
VHCAGCTGDB		 SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_2 		0.903 0.885
TFAP4
M08712_2.00 		Homo sapiens
VMNCAGCTGR
YCAGCTGNKB		 Misc
Kulakovskiy et al.(2013)
TFAP4_HUMAN.H11MO.0.A 		0.903 0.885
TFAP4
M09453_2.00 		Homo sapiens
NVHCAGCTGD
HCAGCTGDBN		 Misc
Heinz et al.(2010)
AML-Tfap4_GSE45738 		0.903 0.885
TFAP4
M09802_2.00 		Homo sapiens
MNGNCHVCAGCTGDBBBW
WVVVHCAGCTGBDGNCNK		 Transfac
Matys et al.(2006)
V$AP4_01 		0.903 0.885
TFAP4
M09803_2.00 		Homo sapiens
NNSAGCTGHB
VDCAGCTSNN		 Transfac
Matys et al.(2006)
V$AP4_Q5 		0.903 0.885
TFAP4
M09804_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP4_Q6_01 		0.903 0.885
TFAP4
M09805_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP4_Q6_02 		0.903 0.885
TFAP4
M09806_2.00 		Homo sapiens
NVCAGCTGHB
VDCAGCTGBN		 Transfac
Matys et al.(2006)
V$AP4_Q6 		0.903 0.885
TFAP4
M04068_2.00 		Homo sapiens
DHCABMTGDN
NHCAKVTGDH		 SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_1 		0.903 0.885
TFAP4
M04069_2.00 		Homo sapiens
AWCAGCTGWT
AWCAGCTGWT		 SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_2 		0.903 0.885
TFAP4
M04072_2.00 		Homo sapiens
VHCABVTGDB
VHCABVTGDB		 SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_1 		0.903 0.885
TFAP4
M04073_2.00 		Homo sapiens
VHCAGCTGDB
VHCAGCTGDB		 SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_2 		0.903 0.885
crp
M03595_2.00 		Drosophila melanogaster
AACAGCTGWT
AWCAGCTGTT		 SELEX
Nitta et al.(2015)
crp_1 		0.843 0.827
crp
M05937_2.00 		Drosophila melanogaster
VAHCAGCTGAY
RTCAGCTGDWB		 B1H
Zhu et al.(2011)
crp_SANGER_10_FBgn0001994 		0.843 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC37625 bHLH 47 98

Links

Other bHLH family TFs
Other Crassostrea gigas TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-piw_contig_1851-snap-gene-0.3 Pythium iwayamai maker-piw_contig_1851-snap-gene-0.3 N
gw1.23.237.1 Phytophthora capsici gw1.23.237.1 N
PYU1_G008786 Pythium ultimum PYU1_G008786 N
PYU1_G007782 Pythium ultimum PYU1_G007782 N
PITG_12841 Phytophthora infestans PITG_12841 N
PITG_12840 Phytophthora infestans PITG_12840 N
Physo143270 Phytophthora sojae Physo143270 N
Physo143269 Phytophthora sojae Physo143269 N
Physo134087 Phytophthora sojae Physo134087 N
Phyra93994 Phytophthora ramorum Phyra93994 N
maker-pve_contig_476-snap-gene-0.24 Pythium vexans maker-pve_contig_476-snap-gene-0.24 N
F443_02365 Phytophthora parasitica F443_02365 N
maker-piw_contig_165-snap-gene-0.13 Pythium iwayamai maker-piw_contig_165-snap-gene-0.13 N
maker-pir_contig_87-fgenesh-gene-0.17 Pythium irregulare maker-pir_contig_87-fgenesh-gene-0.17 N
maker-pir_contig_1013-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_1013-fgenesh-gene-0.0 N
maker-par_contig_6510-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_6510-snap-gene-0.1 N
maker-par_contig_6341-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_6341-snap-gene-0.1 N
fgenesh_scip_prom.46568.4280 Phytophthora kernoviae fgenesh_scip_prom.46568.4280 N
fgenesh_scip_prom.28083.3870 Phytophthora lateralis fgenesh_scip_prom.28083.3870 N
fgenesh-pir_contig_1013-abinit-gene-0.11 Pythium irregulare fgenesh-pir_contig_1013-abinit-gene-0.11 N
F443_02366 Phytophthora parasitica F443_02366 N