twist3 (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000019646 T033654_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TWIST1
M08052_2.00 		Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN		 ChIP-seq
Mathelier et al.(2014)
MA1123.1 		0.883 0.904
TWIST1
M08722_2.00 		Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A 		0.883 0.904
Twist1
M08766_2.00 		Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B 		0.883 0.904
TWIST1
M09831_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6_01 		0.883 0.904
TWIST1
M09832_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6 		0.883 0.904
Twist2
M01718_2.00 		Mus musculus
NACATATGKN
NMCATATGTN		 PBM
Weirauch et al.(2014)
pTH5033 		0.883 0.885
twi
M03605_2.00 		Drosophila melanogaster
MACACRTGKB
VMCAYGTGTK		 SELEX
Nitta et al.(2015)
twi_1 		0.879 0.865
twi
M03606_2.00 		Drosophila melanogaster
MNDCMYRHCGVD
HBCGDYRKGHNK		 SELEX
Nitta et al.(2015)
twi_2 		0.879 0.865
twi
M05955_2.00 		Drosophila melanogaster
VCCAGATGTB
VACATCTGGB		 B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900 		0.879 0.865
twi
M05956_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900 		0.879 0.865
twi
M07538_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 DNaseI footprinting
Mathelier et al.(2014)
MA0249.1 		0.879 0.865
twi
M09657_2.00 		Drosophila melanogaster
AACAKVTGBBVD
HBVVCABMTGTT		 Misc
Kulakovskiy et al.(2009)
twi 		0.879 0.865
twi
M09892_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TWI_Q6 		0.879 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000010424 bHLH 106 157

Links

Other bHLH family TFs
Other Danio rerio TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
pros-1 Caenorhabditis elegans WBGene00000448 D
ASTEI07078 Anopheles stephensi ASTEI07078 I
ANCDUO_20174 Ancylostoma duodenale ANCDUO_20174 I
ACYPI001696 Acyrthosiphon pisum ACYPI001696 I
ASU_00242 Ascaris suum ASU_00242 I
D918_02805 Trichuris suis D918_02805 I
DME_0000841401 Dracunculus medinensis DME_0000841401 I
EVEC_0001110501 Enterobius vermicularis EVEC_0001110501 I
HCOI01824000 Haemonchus contortus HCOI01824000 I
L596_g9976 Steinernema carpocapsae L596_g9976 I
L889_g22574 Steinernema feltiae L889_g22574 I
L893_g28279 Steinernema glaseri L893_g28279 I
L898_g8569 Steinernema monticolum L898_g8569 I
nAv.1.0.1.g04749 Acanthocheilonema viteae nAv.1.0.1.g04749 I
NBR_0000066801 Nippostrongylus brasiliensis NBR_0000066801 I
PTRK_0001568700 Parastrongyloides trichosuri PTRK_0001568700 I
SPAL_0001624500 Strongyloides papillosus SPAL_0001624500 I
SSTP_0000359900 Strongyloides stercoralis SSTP_0000359900 I
SVE_0442300 Strongyloides venezuelensis SVE_0442300 I
TMUE_s0183000500 Trichuris muris TMUE_s0183000500 I
TTRE_0000134301 Trichuris trichiura TTRE_0000134301 I
AEPI001687 Anopheles epiroticus AEPI001687 I
Bm5024 Brugia malayi Bm5024 I
CBG22984 Caenorhabditis briggsae CBG22984 I
CBN10125 Caenorhabditis brenneri CBN10125 I
CJA12444 Caenorhabditis japonica CJA12444 I
EFV53283 Trichinella spiralis EFV53283 I
PHUM334550 Pediculus humanus PHUM334550 I
SINV18378 Solenopsis invicta SINV18378 I
WBGene00244521 Onchocerca volvulus WBGene00244521 I
YQE_10516 Dendroctonus ponderosae YQE_10516 I
Cflo_00868--XP_392355.3_APIME Camponotus floridanus Cflo_00868--XP_392355.3_APIME I
AARA009757 Anopheles arabiensis AARA009757 I
ACHR007729 Anopheles christyi ACHR007729 I
ACUA003826 Anopheles culicifacies ACUA003826 I
AMIN002618 Anopheles minimus AMIN002618 I
TC010596 Tribolium castaneum TC010596 N
maker-nMf.1.1.scaf00605-augustus-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf00605-augustus-gene-0.8 N
LDEC004085 Leptinotarsa decemlineata LDEC004085 N
Minc12662 Meloidogyne incognita Minc12662 N
nDi.2.2.2.g11480 Dirofilaria immitis nDi.2.2.2.g11480 N
nRc.2.0.1.g04054 Romanomermis culicivorax nRc.2.0.1.g04054 N
NV15108 Nasonia vitripennis NV15108 N
RSKR_0000081800 Rhabditophanes kr3021 RSKR_0000081800 N
BXY_0618400 Bursaphelenchus xylophilus BXY_0618400 N