CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CLOCK *(Ochotona princeps)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSOPRG00000005292	T036326_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Clock M01735_2.00	Mus musculus	NNCAYRTGNN	NNCAYRTGNN	PBM Weirauch et al.(2014) pTH5056	0.914	1.000
CLOCK M02789_2.00	Homo sapiens	DACACGTGYH	DRCACGTGTH	SELEX Jolma et al.(2013) CLOCK_1	0.914	1.000
CLOCK M04129_2.00	Homo sapiens	NMCACGTGYN	NRCACGTGKN	SELEX Yin et al.(2017) CLOCK_eDBD_HT-SELEX	0.914	1.000
CLOCK M08728_2.00	Homo sapiens	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_HUMAN.H11MO.0.C	0.914	1.000
Clock M08760_2.00	Mus musculus	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_MOUSE.H11MO.0.C	0.914	1.000
Clock M09473_2.00	Mus musculus	CACGTGNN	NNCACGTG	Misc Heinz et al.(2010) Liver-Clock_GSE39860	0.914	1.000
CLOCK M09849_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CLOCK_Q6	0.914	1.000
CLOCK M04130_2.00	Homo sapiens	NRCRCRTGBH	DVCAYGYGYN	SELEX Yin et al.(2017) CLOCK_eDBD_Methyl-HT-SELEX	0.914	1.000
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSOPRP00000004875	bHLH	35	85	KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK

Links
Other bHLH family TFs
Other *Ochotona princeps* TFs

77 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
mab-3	Caenorhabditis elegans	WBGene00003100	D
CJA05174	Caenorhabditis japonica	CJA05174	I
TELCIR_03315	Teladorsagia circumcincta	TELCIR_03315	I
SMUV_0000808801	Syphacia muris	SMUV_0000808801	I
HPLM_0001799301	Haemonchus placei	HPLM_0001799301	I
DME_0000089401	Dracunculus medinensis	DME_0000089401	I
DICVIV_07866	Dictyocaulus viviparus	DICVIV_07866	I
CRE05176	Caenorhabditis remanei	CRE05176	I
ANCCEY_06946	Ancylostoma ceylanicum	ANCCEY_06946	N
ASU_12809	Ascaris suum	ASU_12809	N
BTMF_0000069401	Brugia timori	BTMF_0000069401	N
BXY_1758300	Bursaphelenchus xylophilus	BXY_1758300	N
ALUE_0001936401	Ascaris lumbricoides	ALUE_0001936401	N
ACAC_0000218001	Angiostrongylus cantonensis	ACAC_0000218001	N
WBGene00246765	Onchocerca volvulus	WBGene00246765	N
L893_g18186	Steinernema glaseri	L893_g18186	N
L898_g139	Steinernema monticolum	L898_g139	N
nDi.2.2.2.g08383	Dirofilaria immitis	nDi.2.2.2.g08383	N
TCLT_0000932101	Thelazia callipaeda	TCLT_0000932101	N
TCNE_0001371701	Toxocara canis	TCNE_0001371701	N
Bm6751	Brugia malayi	Bm6751	N
TELCIR_18692	Teladorsagia circumcincta	TELCIR_18692	N