Ferd3l (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000011091 T037196_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FERD3L
M04140_2.00 		Homo sapiens
GYVACAGCTGKYRC
GYRMCAGCTGTBRC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1 		0.914 1.000
FERD3L
M04141_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2 		0.914 1.000
FERD3L
M04142_2.00 		Homo sapiens
GTVACAGCTGKYRC
GYRMCAGCTGTBAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1 		0.914 1.000
FERD3L
M04143_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2 		0.914 1.000
Fer3
M05993_2.00 		Drosophila melanogaster
GKVACAGVTG
CABCTGTBMC		 B1H
Zhu et al.(2011)
Fer3_da_SANGER_5_FBgn0037937 		0.890 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000014731 bHLH 102 154

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BPC6 Arabidopsis thaliana AT5G42520 D
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I
Bo6g076850 Brassica oleracea Bo6g076850 I
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I
Carubv10026720m.g Capsella rubella Carubv10026720m.g I
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I
Lus10012389.g Linum usitatissimum Lus10012389.g I
Lus10024313.g Linum usitatissimum Lus10024313.g I
MDP0000933138 Malus domestica MDP0000933138 I
MDP0000947167 Malus domestica MDP0000947167 I
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I
PK03443.1 Cannabis sativa PK03443.1 I
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I
Bra003405 Brassica rapa Bra003405 I
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I
GLYMA04G02860 Glycine max GLYMA04G02860 I
GLYMA06G02880 Glycine max GLYMA06G02880 I
MTR_1g023660 Medicago truncatula MTR_1g023660 I
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I
TCM_034171 Theobroma cacao TCM_034171 I
Cla022781 Citrullus lanatus Cla022781 I
Pm006246 Prunus mume Pm006246 I
30170.m014145 Ricinus communis 30170.m014145 I
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I
Cucsa.159750 Cucumis sativus Cucsa.159750 I
mgf000855m Mimulus guttatus mgf000855m N