Arntl (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000014448 T037207_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arntl
M09889_2.00		 Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arntl
M01751_2.00 		Mus musculus
NCACGTGAYN
NRTCACGTGN		 PBM
Weirauch et al.(2014)
pTH5064 		0.914 1.000
ARNTL
M02787_2.00 		Homo sapiens
GTCACGTGAC
GTCACGTGAC		 SELEX
Jolma et al.(2013)
ARNTL_1 		0.914 1.000
ARNTL
M04124_2.00 		Homo sapiens
RDCACGTGHN
NDCACGTGHY		 SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX 		0.914 1.000
ARNTL
M08725_2.00 		Homo sapiens
NVDCACGTGBN
NVCACGTGHBN		 Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A 		0.914 1.000
Arntl
M08776_2.00 		Mus musculus
VCACGTGMN
NKCACGTGB		 Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A 		0.914 1.000
Arntl
M09478_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860 		0.914 1.000
ARNTL
M09841_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_Q6 		0.914 1.000
ARNTL
M04125_2.00 		Homo sapiens
NDCACRTGHY
RDCAYGTGHN		 SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000042830 bHLH 73 126

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10019039m.g Citrus clementina Ciclev10019039m.g N
TRAES3BF066400010CFD_g Triticum aestivum TRAES3BF066400010CFD_g N
TRIUR3_22986 Triticum urartu TRIUR3_22986 N
ABI3 Vitis vinifera VIT_07s0005g05400 N
Ca_21518 Cicer arietinum Ca_21518 N
Cla015213 Citrullus lanatus Cla015213 N
Pm020417 Prunus mume Pm020417 N
30204.m001803 Ricinus communis 30204.m001803 N
cassava2971.m1 Manihot esculenta cassava2971.m1 N
cassava34238.m1 Manihot esculenta cassava34238.m1 N
Cucsa.078480 Cucumis sativus Cucsa.078480 N
mgf023017m Mimulus guttatus mgf023017m N
Aquca_108_00003 Aquilegia coerulea Aquca_108_00003 N
Bostr.19424s0154 Boechera stricta Bostr.19424s0154 N
Cagra.2774s0002 Capsella grandiflora Cagra.2774s0002 N
Carubv10016094m.g Capsella rubella Carubv10016094m.g N
TCM_003056 Theobroma cacao TCM_003056 N
Eucgr.H00815 Eucalyptus grandis Eucgr.H00815 N
evm.TU.supercontig_8.187 Carica papaya evm.TU.supercontig_8.187 N
gene17562-v1.0-hybrid Fragaria vesca gene17562-v1.0-hybrid N
Gorai.001G184300 Gossypium raimondii Gorai.001G184300 N
Lus10011888.g Linum usitatissimum Lus10011888.g N
Lus10022820.g Linum usitatissimum Lus10022820.g N
MDP0000166580 Malus domestica MDP0000166580 N
MDP0000309680 Malus domestica MDP0000309680 N
orange1.1g038867m.g Citrus sinensis orange1.1g038867m.g N
Pavir.Ea03476 Panicum virgatum Pavir.Ea03476 N
Pavir.J03563 Panicum virgatum Pavir.J03563 N
SapurV1A.0937s0080 Salix purpurea SapurV1A.0937s0080 N
Thhalv10003110m.g Eutrema salsugineum Thhalv10003110m.g N
chr1.CM0147.220.nd Lotus japonicus chr1.CM0147.220.nd N
PDK_20s1318001g001 Phoenix dactylifera PDK_20s1318001g001 N
OBART01G41410 Oryza barthii OBART01G41410 N
ABI3 Arabidopsis thaliana AT3G24650 N
BGIOSGA000276 Oryza indica BGIOSGA000276 N
Bo3g083650 Brassica oleracea Bo3g083650 N
Bra013248 Brassica rapa Bra013248 N
F775_43744 Aegilops tauschii F775_43744 N
ABI3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3002399 N
GLYMA08G47240 Glycine max GLYMA08G47240 N
GLYMA18G38490 Glycine max GLYMA18G38490 N
GRMZM2G133398 Zea mays GRMZM2G133398 N
GSMUA_Achr7G23040_001 Musa acuminata GSMUA_Achr7G23040_001 N
GSMUA_AchrUn_randomG18520_001 Musa acuminata GSMUA_AchrUn_randomG18520_001 N
LPERR01G35880 Leersia perrieri LPERR01G35880 N
MLOC_69727 Hordeum vulgare MLOC_69727 N
MTR_7g059330 Medicago truncatula MTR_7g059330 N
OB01G50120 Oryza brachyantha OB01G50120 N
AMTR_s00049p00034730 Amborella trichopoda AMTR_s00049p00034730 N
OGLUM01G45580 Oryza glumaepatula OGLUM01G45580 N
OLONG_001180 Oryza longistaminata OLONG_001180 N
OMERI01G38380 Oryza meridionalis OMERI01G38380 N
ONIVA01G46510 Oryza nivara ONIVA01G46510 N
ORGLA01G0353400 Oryza glaberrima ORGLA01G0353400 N
ORUFI01G44750 Oryza rufipogon ORUFI01G44750 N
VP1 Oryza sativa OS01G0911700 N
PGSC0003DMG400020088 Solanum tuberosum PGSC0003DMG400020088 N
PGSC0003DMG400020155 Solanum tuberosum PGSC0003DMG400020155 N
POPTR_0002s25330 Populus trichocarpa POPTR_0002s25330 N
PRUPE_ppa001608mg Prunus persica PRUPE_ppa001608mg N
Sb03g043480 Sorghum bicolor Sb03g043480 N
Si000497m.g Setaria italica Si000497m.g N
Solyc06g083590.2 Solanum lycopersicum Solyc06g083590.2 N
Solyc06g083600.1 Solanum lycopersicum Solyc06g083600.1 N