twist3 (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000000441 T037696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Twist2
M01718_2.00 		Mus musculus
NACATATGKN
NMCATATGTN		 PBM
Weirauch et al.(2014)
pTH5033 		0.903 0.904
TWIST1
M08052_2.00 		Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN		 ChIP-seq
Mathelier et al.(2014)
MA1123.1 		0.903 0.904
TWIST1
M08722_2.00 		Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A 		0.903 0.904
Twist1
M08766_2.00 		Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B 		0.903 0.904
TWIST1
M09831_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6_01 		0.903 0.904
TWIST1
M09832_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6 		0.903 0.904
twi
M03605_2.00 		Drosophila melanogaster
MACACRTGKB
VMCAYGTGTK		 SELEX
Nitta et al.(2015)
twi_1 		0.859 0.827
twi
M03606_2.00 		Drosophila melanogaster
MNDCMYRHCGVD
HBCGDYRKGHNK		 SELEX
Nitta et al.(2015)
twi_2 		0.859 0.827
twi
M05955_2.00 		Drosophila melanogaster
VCCAGATGTB
VACATCTGGB		 B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900 		0.859 0.827
twi
M05956_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900 		0.859 0.827
twi
M07538_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 DNaseI footprinting
Mathelier et al.(2014)
MA0249.1 		0.859 0.827
twi
M09657_2.00 		Drosophila melanogaster
AACAKVTGBBVD
HBVVCABMTGTT		 Misc
Kulakovskiy et al.(2009)
twi 		0.859 0.827
twi
M09892_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TWI_Q6 		0.859 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000003042 bHLH 104 155

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.013G004400 Gossypium raimondii Gorai.013G004400 I
Si006667m.g Setaria italica Si006667m.g N
chr4.CM0234.370.nd Lotus japonicus chr4.CM0234.370.nd N
Pavir.J20659 Panicum virgatum Pavir.J20659 N
Pavir.Ia03469 Panicum virgatum Pavir.Ia03469 N
Pavir.Da01921 Panicum virgatum Pavir.Da01921 N
Gorai.010G045700 Gossypium raimondii Gorai.010G045700 N
Gorai.002G219800 Gossypium raimondii Gorai.002G219800 N
evm.TU.supercontig_49.112 Carica papaya evm.TU.supercontig_49.112 N
Traes_4DL_73DC40D7B Triticum aestivum Traes_4DL_73DC40D7B N
Traes_4BL_DAFEC95DD Triticum aestivum Traes_4BL_DAFEC95DD N
Traes_4AS_6EDD5ACF7 Triticum aestivum Traes_4AS_6EDD5ACF7 N
TCM_034993 Theobroma cacao TCM_034993 N
Solyc12g056860.1 Solanum lycopersicum Solyc12g056860.1 N
Solyc04g072460.2 Solanum lycopersicum Solyc04g072460.2 N
Si036527m.g Setaria italica Si036527m.g N
BGIOSGA010850 Oryza indica BGIOSGA010850 N
Sb01g037050 Sorghum bicolor Sb01g037050 N
PGSC0003DMG400016951 Solanum tuberosum PGSC0003DMG400016951 N
TGA2.2 Oryza sativa OS03G0318600 N
ORUFI03G15900 Oryza rufipogon ORUFI03G15900 N
ORGLA03G0146300 Oryza glaberrima ORGLA03G0146300 N
OPUNC03G14770 Oryza punctata OPUNC03G14770 N
ONIVA03G16290 Oryza nivara ONIVA03G16290 N
OMERI03G13930 Oryza meridionalis OMERI03G13930 N
OLONG_001724 Oryza longistaminata OLONG_001724 N
OGLUM03G15460 Oryza glumaepatula OGLUM03G15460 N
OBART03G15290 Oryza barthii OBART03G15290 N
MLOC_64008 Hordeum vulgare MLOC_64008 N
GRMZM2G174284 Zea mays GRMZM2G174284 N
GRMZM2G056099 Zea mays GRMZM2G056099 N
BRADI1G64060 Brachypodium distachyon BRADI1G64060 N