ascl1a (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000012801 T037892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASCL1
M04135_2.00 		Homo sapiens
NRCASSTGYN
NRCASSTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_HT-SELEX 		0.894 0.980
ASCL1
M08055_2.00 		Homo sapiens
NNRGCAGCTGSNN
NNSCAGCTGCYNN		 ChIP-seq
Mathelier et al.(2014)
MA1100.1 		0.894 0.980
ASCL1
M08730_2.00 		Homo sapiens
NNVCASCTGCYBYN
NRVRGCAGSTGBNN		 Misc
Kulakovskiy et al.(2013)
ASCL1_HUMAN.H11MO.0.A 		0.894 0.980
Ascl1
M08748_2.00 		Mus musculus
BHSCASCTGCYBBN
NVVRGCAGSTGSDV		 Misc
Kulakovskiy et al.(2013)
ASCL1_MOUSE.H11MO.0.A 		0.894 0.980
Ascl1
M09464_2.00 		Mus musculus
NVCABCTGBBNN
NNVVCAGVTGBN		 Misc
Heinz et al.(2010)
NeuralTubes-Ascl1_GSE55840 		0.894 0.980
ASCL1
M09855_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_01 		0.894 0.980
ASCL1
M09856_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_02 		0.894 0.980
ASCL1
M09857_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6 		0.894 0.980
ASCL1
M04136_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_Methyl-HT-SELEX 		0.894 0.980
Ascl2
M00117_2.00 		Mus musculus
NVCABVTGBN
NVCABVTGBN		 PBM
Badis et al.(2009)
Ascl2_2654 		0.851 0.860
Ascl2
M02814_2.00 		Mus musculus
RRCAGCTGYY
RRCAGCTGYY		 SELEX
Jolma et al.(2013)
Ascl2_1 		0.851 0.860
Ascl2
M08744_2.00 		Mus musculus
RGCAGSTGB
VCASCTGCY		 Misc
Kulakovskiy et al.(2013)
ASCL2_MOUSE.H11MO.0.C 		0.851 0.860
ASCL2
M04207_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL2_eDBD_HT-SELEX 		0.851 0.840
ASCL2
M04209_2.00 		Homo sapiens
VCACRACGCD
HGCGTYGTGB		 SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_1 		0.851 0.840
ASCL2
M04210_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_2 		0.851 0.840
ASCL2
M04208_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL2_eDBD_Methyl-HT-SELEX 		0.851 0.840
ASCL2
M04211_2.00 		Homo sapiens
VRCAGCTGYB
VRCAGCTGYB		 SELEX
Yin et al.(2017)
ASCL2_FL_Methyl-HT-SELEX 		0.851 0.840
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000032399 bHLH 91 141

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G23520 Brachypodium distachyon BRADI2G23520 N
F775_18084 Aegilops tauschii F775_18084 N
GRMZM2G061906 Zea mays GRMZM2G061906 N
MLOC_60455 Hordeum vulgare MLOC_60455 N
OB05G26550 Oryza brachyantha OB05G26550 N
OBART05G18950 Oryza barthii OBART05G18950 N
OPUNC05G16540 Oryza punctata OPUNC05G16540 N
ORGLA05G0163800 Oryza glaberrima ORGLA05G0163800 N
Sb09g022280 Sorghum bicolor Sb09g022280 N
Si023133m.g Setaria italica Si023133m.g N
Traes_1AL_81A6723C9 Triticum aestivum Traes_1AL_81A6723C9 N
Traes_1DL_A2C6C77E8 Triticum aestivum Traes_1DL_A2C6C77E8 N
TRIUR3_14889 Triticum urartu TRIUR3_14889 N
Pavir.J06547 Panicum virgatum Pavir.J06547 N
Pavir.J15729 Panicum virgatum Pavir.J15729 N