Gfo_R006237 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R006237 T047326_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LYL1
M08714_2.00 		Homo sapiens
VNRRNVVCAGMWGN
NCWKCTGBBNYYNB		 Misc
Kulakovskiy et al.(2013)
LYL1_HUMAN.H11MO.0.A 		0.892 0.808
TAL1
M08734_2.00 		Homo sapiens
BSTTATCWSNNNNNNVCVV
BBGBNNNNNNSWGATAASV		 Misc
Kulakovskiy et al.(2013)
TAL1_HUMAN.H11MO.0.A 		0.870 0.865
Tal1
M08759_2.00 		Mus musculus
BYKBNNNNNNVWGATAAVVN
NBBTTATCWBNNNNNNVMRV		 Misc
Kulakovskiy et al.(2013)
TAL1_MOUSE.H11MO.0.A 		0.870 0.865
Tal1
M09471_2.00 		Mus musculus
NVCWKMWG
CWKMWGBN		 Misc
Heinz et al.(2010)
HPC7-Scl_GSE13511 		0.870 0.865
Tal1
M09472_2.00 		Mus musculus
YTATCWSNNNNNNVCAGVHN
NDBCTGBNNNNNNSWGATAR		 Misc
Heinz et al.(2010)
Ter119-SCL_GSE18720 		0.870 0.865
TAL1
M09870_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_01 		0.870 0.865
TAL1
M09871_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_Q6_01 		0.870 0.865
TAL1
M09872_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_Q6 		0.870 0.865
Lyl1
M08763_2.00 		Mus musculus
VNRRNVVCAGMWGN
NCWKCTGBBNYYNB		 Misc
Kulakovskiy et al.(2013)
LYL1_MOUSE.H11MO.0.A 		0.856 0.788
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006237 bHLH 3 55

Links

Other bHLH family TFs
Other Geospiza fortis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orf19.801 Candida albicans orf19.801 D
TBF1 Saccharomyces cerevisiae YPL128C D
ZBAI_05815 Zygosaccharomyces bailii ZBAI_05815 I
PAS_chr1-4_0281 Komagataella pastoris PAS_chr1-4_0281 I
PGUG_03851 Meyerozyma guilliermondii PGUG_03851 I
PICST_47348 Scheffersomyces stipitis PICST_47348 I
SKUD_201904 Saccharomyces kudriavzevii SKUD_201904 I
SPAPADRAFT_55275 Spathaspora passalidarum SPAPADRAFT_55275 I
SU7_3534 Saccharomyces arboricola SU7_3534 I
TBLA_0B04080 Tetrapisispora blattae TBLA_0B04080 I
ZBAI_00516 Zygosaccharomyces bailii ZBAI_00516 I
LELG_01028 Lodderomyces elongisporus LELG_01028 I
ZYRO0F06292g Zygosaccharomyces rouxii ZYRO0F06292g I
e_gwh1.5.1.153.1 Pichia stipitis e_gwh1.5.1.153.1 I
21800_YPL128C Saccharomyces mikatae 21800_YPL128C I
22419_YPL128C Saccharomyces paradoxus 22419_YPL128C I
25381_YPL128C Saccharomyces bayanus 25381_YPL128C I
KLTH0D10164g Kluyveromyces thermotolerans KLTH0D10164g I
Kwal_8619 Kluyveromyces waltii Kwal_8619 I
SAKL0H07678g Lachancea kluyveri SAKL0H07678g I
XP_002490398.1 Pichia pastoris XP_002490398.1 I
CLUG_01092 Clavispora lusitaniae CLUG_01092 I
CPAG_00784 Candida parapsilosis CPAG_00784 I
PGUG_03851 Candida guilliermondii PGUG_03851 I
AACERI_AaceriACR096W Saccharomycetaceae sp ashbya aceri AACERI_AaceriACR096W I
AGOS_ACR096W Ashbya gossypii AGOS_ACR096W I
BN7_5968 Wickerhamomyces ciferrii BN7_5968 I
CANTEDRAFT_127045 Candida tenuis CANTEDRAFT_127045 I
CaO19.801 Candida albicans CaO19.801 I
CaO19.8420 Candida albicans CaO19.8420 I
CD36_18830 Candida dubliniensis CD36_18830 I
CLUG_01092 Candida lusitaniae CLUG_01092 I
CORT_0A10400 Candida orthopsilosis CORT_0A10400 I
CTRG_01572 Candida tropicalis CTRG_01572 I
DEHA2C16346g Debaryomyces hansenii DEHA2C16346g I
Ecym_8316 Eremothecium cymbalariae Ecym_8316 I
G210_0538 Candida maltosa G210_0538 I
GNLVRS01_PISO0L21659g Millerozyma farinosa GNLVRS01_PISO0L21659g I
KLTH0D10164g Lachancea thermotolerans KLTH0D10164g I
Kpol_530p11 Vanderwaltozyma polyspora Kpol_530p11 I
LALA0_S10e01860g Lachancea lanzarotensis LALA0_S10e01860g I