Gfo_R006824 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R006824 T047329_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HIF1A
M08049_2.00 		Homo sapiens
NBACGTGCNN
NNGCACGTVN		 ChIP-seq
Mathelier et al.(2014)
MA1106.1 		0.857 0.887
HIF1A
M08713_2.00 		Homo sapiens
VDACGTGM
KCACGTHB		 Misc
Kulakovskiy et al.(2013)
HIF1A_HUMAN.H11MO.0.C 		0.857 0.887
Hif1a
M08750_2.00 		Mus musculus
VDACGTGM
KCACGTHB		 Misc
Kulakovskiy et al.(2013)
HIF1A_MOUSE.H11MO.0.C 		0.857 0.887
HIF1A
M09454_2.00 		Homo sapiens
KACGTGMN
NKCACGTM		 Misc
Heinz et al.(2010)
MCF7-HIF1a_GSE28352 		0.857 0.887
HIF1A
M09807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HIF1A_Q3 		0.857 0.887
HIF1A
M09808_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HIF1A_Q5 		0.857 0.887
HIF1A
M09809_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HIF1A_Q6 		0.857 0.887
HIF1A
M09810_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HIF1_Q3 		0.857 0.887
HIF1A
M09811_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HIF1_Q5 		0.857 0.887
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006824 bHLH 1 53

Links

Other bHLH family TFs
Other Geospiza fortis TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HIF1A Homo sapiens ENSG00000100644 D 0.857
Hif1a Mus musculus ENSMUSG00000021109 D 0.857
ENSPSIG00000010467 Pelodiscus sinensis ENSPSIG00000010467 I 0.914
hif1a Xenopus tropicalis XB-GENE-946622 I 0.857
ABF71072 Xenopus laevis ABF71072 I 0.857
AAO72733 Xenopus laevis AAO72733 I 0.857
AAI26006 Xenopus laevis AAI26006 I 0.857
Tal_R011146 Tyto alba Tal_R011146 I 0.914
Ogr06281 Ophisaurus gracilis Ogr06281 I 0.889
Cmyd_10008490 Chelonia mydas Cmyd_10008490 I 0.914
Brh_R012268 Buceros rhinoceros Brh_R012268 I 0.914
Alligator_sinensis_CCG014229.1 Alligator sinensis Alligator_sinensis_CCG014229.1 I 0.914
Afo_R010338 Aptenodytes forsteri Afo_R010338 I 0.914
Aan_R001655 Calypte anna Aan_R001655 I 0.914
ENSTNIG00000019821 Tetraodon nigroviridis ENSTNIG00000019821 I 0.889
HIF1A Taeniopygia guttata ENSTGUG00000012978 I 0.914
ENSSHAG00000012129 Sarcophilus harrisii ENSSHAG00000012129 I 0.889
HIF1A Anolis carolinensis ENSACAG00000016205 I 0.889
ENSORLG00000015698 Oryzias latipes ENSORLG00000015698 I 0.852
HIF1A Monodelphis domestica ENSMODG00000008760 I 0.889
HIF1A Meleagris gallopavo ENSMGAG00000013552 I 0.914
ENSLOCG00000010146 Lepisosteus oculatus ENSLOCG00000010146 I 0.889
HIF1A Gallus gallus ENSGALG00000011870 I 0.914
ENSFALG00000003396 Ficedula albicollis ENSFALG00000003396 I 0.914
ENSAPLG00000002715 Anas platyrhynchos ENSAPLG00000002715 I 0.914
ENSAMXG00000019342 Astyanax mexicanus ENSAMXG00000019342 I 0.864
ENSPMAG00000000126 Petromyzon marinus ENSPMAG00000000126 N 0.853
ENSONIG00000020112 Oreochromis niloticus ENSONIG00000020112 N 0.852
epas1b Danio rerio ENSDARG00000057671 N 0.861