29804.m001498 (Ricinus communis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 29804.m001498 T047864_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.912 0.800
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.884 0.620
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.860 0.600
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.860 0.600
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.860 0.600
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.860 0.580
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.860 0.580
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.849 0.560
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.840 0.600
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29804.m001498 bHLH 128 177

Links

Other bHLH family TFs
Other Ricinus communis TFs

565 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NBR_0000522801 Nippostrongylus brasiliensis NBR_0000522801 I
ENSAPLG00000004964 Anas platyrhynchos ENSAPLG00000004964 I
SMAD9 Cavia porcellus ENSCPOG00000010255 I
smad9 Danio rerio ENSDARG00000021938 I
ENSGMOG00000005788 Gadus morhua ENSGMOG00000005788 I
ENSGMOG00000012301 Gadus morhua ENSGMOG00000012301 I
ENSLOCG00000008478 Lepisosteus oculatus ENSLOCG00000008478 I
ENSMGAG00000001351 Meleagris gallopavo ENSMGAG00000001351 I
ENSPMAG00000009833 Petromyzon marinus ENSPMAG00000009833 I
SMAD9 Taeniopygia guttata ENSTGUG00000011897 I
HelroG186716 Helobdella robusta HelroG186716 I
nLs.2.1.2.g02003 Litomosoides sigmodontis nLs.2.1.2.g02003 N
L892_g4529 Steinernema scapterisci L892_g4529 N
NBR_0000271401 Nippostrongylus brasiliensis NBR_0000271401 N
nAv.1.0.1.g05112 Acanthocheilonema viteae nAv.1.0.1.g05112 N
maker-nMf.1.1.scaf00076-augustus-gene-0.21 Meloidogyne floridensis maker-nMf.1.1.scaf00076-augustus-gene-0.21 N
L898_g14583 Steinernema monticolum L898_g14583 N
L893_g15060 Steinernema glaseri L893_g15060 N
EEL_0000068901 Elaeophora elaphi EEL_0000068901 N
nOo.2.0.1.g00974 Onchocerca ochengi nOo.2.0.1.g00974 N
OFLC_0000052301 Onchocerca flexuosa OFLC_0000052301 N
PTRK_0000297300 Parastrongyloides trichosuri PTRK_0000297300 N
RSKR_0000082500 Rhabditophanes kr3021 RSKR_0000082500 N
SMUV_0000477801 Syphacia muris SMUV_0000477801 N
SPAL_0001290200 Strongyloides papillosus SPAL_0001290200 N
SVE_0161800 Strongyloides venezuelensis SVE_0161800 N
TCLT_0000791701 Thelazia callipaeda TCLT_0000791701 N
BTMF_0000953701 Brugia timori BTMF_0000953701 N
Bm7459 Brugia malayi Bm7459 N
CBG06922 Caenorhabditis briggsae CBG06922 N
CRE15772 Caenorhabditis remanei CRE15772 N
LOAG_01471 Loa loa LOAG_01471 N
sma-2 Caenorhabditis elegans WBGene00004856 N
WBGene00245189 Onchocerca volvulus WBGene00245189 N
Minc06478 Meloidogyne incognita Minc06478 N
ASU_06962 Ascaris suum ASU_06962 N
L596_g26009 Steinernema carpocapsae L596_g26009 N
BXY_1512700 Bursaphelenchus xylophilus BXY_1512700 N
DME_0000390001 Dracunculus medinensis DME_0000390001 N
WUBG_02400 Wuchereria bancrofti WUBG_02400 N
EVEC_0000636701 Enterobius vermicularis EVEC_0000636701 N
HCOI00251100 Haemonchus contortus HCOI00251100 N
HCOI01543700 Haemonchus contortus HCOI01543700 N
HPBE_0002664601 Heligmosomoides bakeri HPBE_0002664601 N