Carubv10008815m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10008815m.g T049363_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.914 1.000
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.914 1.000
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.914 1.000
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.914 1.000
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.914 1.000
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.914 0.960
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.877 0.840
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.872 0.620
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.872 0.580
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.860
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.860
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.860
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.868 0.840
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.855 0.820
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.855 0.820
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.840 0.660
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008815m bHLH 345 394

Links

Other bHLH family TFs
Other Capsella rubella TFs

575 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm001154 Prunus mume Pm001154 N
Ciclev10003738m.g Citrus clementina Ciclev10003738m.g N
Carubv10023654m.g Capsella rubella Carubv10023654m.g N
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N
mgf025442m Mimulus guttatus mgf025442m N
mgf022253m Mimulus guttatus mgf022253m N
Cucsa.385700 Cucumis sativus Cucsa.385700 N
cassava28523.m1 Manihot esculenta cassava28523.m1 N
Ciclev10029810m.g Citrus clementina Ciclev10029810m.g N
Cla008847 Citrullus lanatus Cla008847 N
Ca_17453 Cicer arietinum Ca_17453 N
FIT1 Vitis vinifera VIT_06s0061g00720 N
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N
TCM_041590 Theobroma cacao TCM_041590 N
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N
orange1.1g042465m.g Citrus sinensis orange1.1g042465m.g N
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N
PK26582.1 Cannabis sativa PK26582.1 N
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N
Pavir.J29678 Panicum virgatum Pavir.J29678 N
Pavir.J28741 Panicum virgatum Pavir.J28741 N
Pavir.Ga01979 Panicum virgatum Pavir.Ga01979 N
Si010533m.g Setaria italica Si010533m.g N
orange1.1g021355m.g Citrus sinensis orange1.1g021355m.g N
Lus10016151.g Linum usitatissimum Lus10016151.g N
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N
evm.TU.contig_28125.2 Carica papaya evm.TU.contig_28125.2 N
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N
Ciclev10030052m.g Citrus clementina Ciclev10030052m.g N
Bra034392 Brassica rapa Bra034392 N
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N
GRMZM2G173521 Zea mays GRMZM2G173521 N
GRMZM2G107672 Zea mays GRMZM2G107672 N
GLYMA13G39650 Glycine max GLYMA13G39650 N
GLYMA12G30240 Glycine max GLYMA12G30240 N
GLYMA12G08640 Glycine max GLYMA12G08640 N
GLYMA11G19850 Glycine max GLYMA11G19850 N
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N
LPERR04G07210 Leersia perrieri LPERR04G07210 N
Bra011972 Brassica rapa Bra011972 N
Bra000495 Brassica rapa Bra000495 N
Bo4g165090 Brassica oleracea Bo4g165090 N
Bo4g071850 Brassica oleracea Bo4g071850 N
Bo3g040310 Brassica oleracea Bo3g040310 N
BGIOSGA016251 Oryza indica BGIOSGA016251 N
FIT Arabidopsis thaliana AT2G28160 N
AMTR_s00102p00056000 Amborella trichopoda AMTR_s00102p00056000 N
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N
Si010468m.g Setaria italica Si010468m.g N
Sb06g012030 Sorghum bicolor Sb06g012030 N
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N
FIT1 Populus trichocarpa POPTR_0009s01100 N
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N
OS04G0381700 Oryza sativa OS04G0381700 N
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N
ORGLA04G0072000 Oryza glaberrima ORGLA04G0072000 N
AMTR_s00102p00046460 Amborella trichopoda AMTR_s00102p00046460 N
OPUNC04G08160 Oryza punctata OPUNC04G08160 N
OLONG_016577 Oryza longistaminata OLONG_016577 N
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N
OBART04G10120 Oryza barthii OBART04G10120 N
OB04G17410 Oryza brachyantha OB04G17410 N
MTR_4g057270 Medicago truncatula MTR_4g057270 N
MTR_2g084280 Medicago truncatula MTR_2g084280 N
MLOC_6707 Hordeum vulgare MLOC_6707 N