Pavir.J08536 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J08536 T050876_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.887 0.843
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.851 0.784
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.851 0.784
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.845 0.725
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.845 0.725
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J08536.1.p bHLH 44 94

Links

Other bHLH family TFs
Other Panicum virgatum TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASU_07762 Ascaris suum ASU_07762 N
TCNE_0001717001 Toxocara canis TCNE_0001717001 N
PEQ_0000179401 Parascaris equorum PEQ_0000179401 N
OFLC_0001133401 Onchocerca flexuosa OFLC_0001133401 N
OESDEN_21729 Oesophagostomum dentatum OESDEN_21729 N
OESDEN_10899 Oesophagostomum dentatum OESDEN_10899 N
nOo.2.0.1.g02446 Onchocerca ochengi nOo.2.0.1.g02446 N
nLs.2.1.2.g05187 Litomosoides sigmodontis nLs.2.1.2.g05187 N
nDi.2.2.2.g06500 Dirofilaria immitis nDi.2.2.2.g06500 N
nAv.1.0.1.g04153 Acanthocheilonema viteae nAv.1.0.1.g04153 N
HPBE_0000914901 Heligmosomoides bakeri HPBE_0000914901 N
HCOI00019900 Haemonchus contortus HCOI00019900 N
GPUH_0001236501 Gongylonema pulchrum GPUH_0001236501 N
EVEC_0000366901 Enterobius vermicularis EVEC_0000366901 N
DME_0000078101 Dracunculus medinensis DME_0000078101 N
BTMF_0000251301 Brugia timori BTMF_0000251301 N
WUBG_01220 Wuchereria bancrofti WUBG_01220 N
ANCCAN_03211 Ancylostoma caninum ANCCAN_03211 N
PPAI006116 Phlebotomus papatasi PPAI006116 N
LLOJ005741 Lutzomyia longipalpis LLOJ005741 N
LDEC010382 Leptinotarsa decemlineata LDEC010382 N
Hsal_12949--XP_001121257.1_APIME Harpegnathos saltator Hsal_12949--XP_001121257.1_APIME N
Cflo_10168--XP_001121257.1_APIME Camponotus floridanus Cflo_10168--XP_001121257.1_APIME N
YQE_05996 Dendroctonus ponderosae YQE_05996 N
WBGene00243099 Onchocerca volvulus WBGene00243099 N
SINV17602 Solenopsis invicta SINV17602 N
PHUM227240 Pediculus humanus PHUM227240 N
NV11270 Nasonia vitripennis NV11270 N
LOAG_18045 Loa loa LOAG_18045 N
GB42021 Apis mellifera GB42021 N
Bm7270 Brugia malayi Bm7270 N
ACEP10253 Atta cephalotes ACEP10253 N