Pavir.J27306 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J27306 T050920_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.877 0.812
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.849 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J27306.1.p bHLH 1 48

Links

Other bHLH family TFs
Other Panicum virgatum TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30089.m001012 Ricinus communis 30089.m001012 N
SapurV1A.3860s0010 Salix purpurea SapurV1A.3860s0010 N
SapurV1A.1951s0040 Salix purpurea SapurV1A.1951s0040 N
SapurV1A.1066s0010 Salix purpurea SapurV1A.1066s0010 N
SapurV1A.0977s0060 Salix purpurea SapurV1A.0977s0060 N
orange1.1g025739m.g Citrus sinensis orange1.1g025739m.g N
Gorai.013G266400 Gossypium raimondii Gorai.013G266400 N
evm.TU.supercontig_34.221 Carica papaya evm.TU.supercontig_34.221 N
Eucgr.J00637 Eucalyptus grandis Eucgr.J00637 N
Ciclev10016383m.g Citrus clementina Ciclev10016383m.g N
mgf016309m Mimulus guttatus mgf016309m N
Cucsa.142580 Cucumis sativus Cucsa.142580 N
GLYMA13G03880 Glycine max GLYMA13G03880 N
Pm001671 Prunus mume Pm001671 N
Cla011265 Citrullus lanatus Cla011265 N
Ca_10228 Cicer arietinum Ca_10228 N
VIT_06s0009g01790 Vitis vinifera VIT_06s0009g01790 N
TCM_042034 Theobroma cacao TCM_042034 N
Solyc01g008980.2 Solanum lycopersicum Solyc01g008980.2 N
PRUPE_ppa022266mg Prunus persica PRUPE_ppa022266mg N
POPTR_0009s02360 Populus trichocarpa POPTR_0009s02360 N
POPTR_0001s22790 Populus trichocarpa POPTR_0001s22790 N
PGSC0003DMG400022706 Solanum tuberosum PGSC0003DMG400022706 N
MTR_5g088230 Medicago truncatula MTR_5g088230 N