Pavir.J27306 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J27306 T050920_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.877 0.812
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.849 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J27306.1.p bHLH 1 48

Links

Other bHLH family TFs
Other Panicum virgatum TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000124672 Malus domestica MDP0000124672 I 0.899
chr2.CM0021.430.nc Lotus japonicus chr2.CM0021.430.nc I 0.895
Ca_22309 Cicer arietinum Ca_22309 I 0.884
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.879
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.879
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.879
GLYMA01G40600 Glycine max GLYMA01G40600 I 0.879
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.879
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.879
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.879
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.879
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.879
OBART03G32580 Oryza barthii OBART03G32580 I 0.879
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.879
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.879
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.879
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.879
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.879
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.879
OS03G0725800 Oryza sativa OS03G0725800 I 0.879
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.879
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.879
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.879
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.879
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.879
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.879
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.879
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.879
Si036393m.g Setaria italica Si036393m.g I 0.879
TCM_000895 Theobroma cacao TCM_000895 I 0.879
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.879
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.879
Cla000123 Citrullus lanatus Cla000123 I 0.879
Pm002305 Prunus mume Pm002305 I 0.879
Pm021008 Prunus mume Pm021008 I 0.879
28179.m000478 Ricinus communis 28179.m000478 I 0.879
28179.m000479 Ricinus communis 28179.m000479 I 0.879
29804.m001498 Ricinus communis 29804.m001498 I 0.879
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.879
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.879
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.879
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.879
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.879
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.879
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.879
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.879
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.879
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.879
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.879
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.879
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.879
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.879
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.879
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.879
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.879
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.879
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.879
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.879
MDP0000174149 Malus domestica MDP0000174149 I 0.879
MDP0000291132 Malus domestica MDP0000291132 I 0.879
MDP0000502440 Malus domestica MDP0000502440 I 0.879
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.879
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.879
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.879
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.879
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.879
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.879
PK09122.1 Cannabis sativa PK09122.1 I 0.879
PK11573.1 Cannabis sativa PK11573.1 I 0.879
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.877
Bo4g150960 Brassica oleracea Bo4g150960 I 0.877
Bra030210 Brassica rapa Bra030210 I 0.877
Bra039924 Brassica rapa Bra039924 I 0.877
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.877
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.877
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.877
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.877
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.877
MDP0000159571 Malus domestica MDP0000159571 I 0.877
MDP0000170202 Malus domestica MDP0000170202 I 0.877
MDP0000318216 Malus domestica MDP0000318216 I 0.877
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.877
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.877
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.877
TCM_006357 Theobroma cacao TCM_006357 I 0.876
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.876
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.876
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.876
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.876
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.874
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.874
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.873
BHLH25 Arabidopsis thaliana AT4G37850 I 0.868
Bo1g003350 Brassica oleracea Bo1g003350 I 0.868
Bo3g153150 Brassica oleracea Bo3g153150 I 0.868
Bra010617 Brassica rapa Bra010617 I 0.868
Bra011790 Brassica rapa Bra011790 I 0.868
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I 0.868
Carubv10006834m.g Capsella rubella Carubv10006834m.g I 0.868
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I 0.868
GLYMA07G13406 Glycine max GLYMA07G13406 N 0.866
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.866
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.866
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.866
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.866
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.866
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I 0.865
TCM_000894 Theobroma cacao TCM_000894 I 0.864
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.864
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.864
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.863
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.862
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.862
Ca_02263 Cicer arietinum Ca_02263 I 0.862
Ca_02264 Cicer arietinum Ca_02264 I 0.862
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.861
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.860
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.860
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.859
F775_11371 Aegilops tauschii F775_11371 I 0.859
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.859
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.859
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.859
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.859
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.859
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.859
Pm002304 Prunus mume Pm002304 I 0.859
GSMUA_Achr3G26180_001 Musa acuminata GSMUA_Achr3G26180_001 I 0.855
GSMUA_Achr4G03160_001 Musa acuminata GSMUA_Achr4G03160_001 I 0.855
GSMUA_Achr7G27600_001 Musa acuminata GSMUA_Achr7G27600_001 I 0.855
GSMUA_Achr8G05170_001 Musa acuminata GSMUA_Achr8G05170_001 I 0.855
estExt_fgenesh1_pg.C_310143 Physcomitrella patens estExt_fgenesh1_pg.C_310143 I 0.855
estExt_fgenesh1_pg.C_420092 Physcomitrella patens estExt_fgenesh1_pg.C_420092 I 0.855
GLYMA05G23530 Glycine max GLYMA05G23530 I 0.852
GLYMA17G16720 Glycine max GLYMA17G16720 I 0.852
GLYMA17G16741 Glycine max GLYMA17G16741 I 0.852
Lus10039640.g Linum usitatissimum Lus10039640.g I 0.852
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.852
GLYMA05G23291 Glycine max GLYMA05G23291 I 0.850
MTR_4g097940 Medicago truncatula MTR_4g097940 I 0.850
AMTR_s00021p00226670 Amborella trichopoda AMTR_s00021p00226670 I 0.849
AMTR_s00099p00127980 Amborella trichopoda AMTR_s00099p00127980 I 0.849
AIB Arabidopsis thaliana AT2G46510 I 0.849
BGIOSGA015604 Oryza indica BGIOSGA015604 I 0.849
Bo4g008180 Brassica oleracea Bo4g008180 I 0.849
Bo4g197150 Brassica oleracea Bo4g197150 I 0.849
Bra004532 Brassica rapa Bra004532 I 0.849
Bra039279 Brassica rapa Bra039279 I 0.849
BRADI2G08080 Brachypodium distachyon BRADI2G08080 I 0.849
F775_26406 Aegilops tauschii F775_26406 I 0.849
ATAIB Arabidopsis lyrata fgenesh2_kg.4__2868__AT2G46510.1 I 0.849
GLYMA03G41901 Glycine max GLYMA03G41901 I 0.849
GLYMA07G06090 Glycine max GLYMA07G06090 I 0.849
GLYMA10G03950 Glycine max GLYMA10G03950 I 0.849
GLYMA13G18131 Glycine max GLYMA13G18131 I 0.849
GLYMA16G02690 Glycine max GLYMA16G02690 I 0.849
GLYMA19G44570 Glycine max GLYMA19G44570 I 0.849
GRMZM2G076636 Zea mays GRMZM2G076636 I 0.849
GRMZM2G148723 Zea mays GRMZM2G148723 I 0.849
GSMUA_Achr10G22310_001 Musa acuminata GSMUA_Achr10G22310_001 I 0.849
GSMUA_Achr1G14370_001 Musa acuminata GSMUA_Achr1G14370_001 I 0.849
GSMUA_Achr1G28110_001 Musa acuminata GSMUA_Achr1G28110_001 I 0.849
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I 0.849
GSMUA_Achr8G05350_001 Musa acuminata GSMUA_Achr8G05350_001 I 0.849
GSMUA_Achr8G26280_001 Musa acuminata GSMUA_Achr8G26280_001 I 0.849
GSMUA_Achr8G26460_001 Musa acuminata GSMUA_Achr8G26460_001 I 0.849
GSMUA_AchrUn_randomG01830_001 Musa acuminata GSMUA_AchrUn_randomG01830_001 I 0.849
LPERR01G07720 Leersia perrieri LPERR01G07720 I 0.849
MLOC_33189 Hordeum vulgare MLOC_33189 I 0.849
MLOC_69470 Hordeum vulgare MLOC_69470 I 0.849
MTR_7g096350 Medicago truncatula MTR_7g096350 I 0.849
MTR_7g117670 Medicago truncatula MTR_7g117670 I 0.849
MTR_8g027495 Medicago truncatula MTR_8g027495 I 0.849
OB01G18800 Oryza brachyantha OB01G18800 I 0.849
OBART01G08590 Oryza barthii OBART01G08590 I 0.849
OGLUM01G09830 Oryza glumaepatula OGLUM01G09830 I 0.849
OLONG_005869 Oryza longistaminata OLONG_005869 I 0.849
OMERI01G08610 Oryza meridionalis OMERI01G08610 I 0.849
ONIVA01G11170 Oryza nivara ONIVA01G11170 I 0.849
OPUNC01G08460 Oryza punctata OPUNC01G08460 I 0.849
ORGLA01G0077100 Oryza glaberrima ORGLA01G0077100 I 0.849
ORUFI01G09400 Oryza rufipogon ORUFI01G09400 I 0.849
OS01G0235700 Oryza sativa OS01G0235700 D 0.849
PGSC0003DMG400000232 Solanum tuberosum PGSC0003DMG400000232 I 0.849
PGSC0003DMG400020066 Solanum tuberosum PGSC0003DMG400020066 I 0.849
POPTR_0002s04310 Populus trichocarpa POPTR_0002s04310 I 0.849
POPTR_0002s17310 Populus trichocarpa POPTR_0002s17310 I 0.849
POPTR_0005s24240 Populus trichocarpa POPTR_0005s24240 I 0.849
POPTR_0014s09520 Populus trichocarpa POPTR_0014s09520 I 0.849
PRUPE_ppa002985mg Prunus persica PRUPE_ppa002985mg I 0.849
PRUPE_ppa008004mg Prunus persica PRUPE_ppa008004mg I 0.849
Sb03g000570 Sorghum bicolor Sb03g000570 I 0.849
Si003963m.g Setaria italica Si003963m.g I 0.849
Solyc01g096050.2 Solanum lycopersicum Solyc01g096050.2 I 0.849
Solyc06g083980.1 Solanum lycopersicum Solyc06g083980.1 I 0.849
TCM_005131 Theobroma cacao TCM_005131 I 0.849
Traes_3AS_337600412 Triticum aestivum Traes_3AS_337600412 I 0.849
Traes_3B_5DC4D39A6 Triticum aestivum Traes_3B_5DC4D39A6 I 0.849
Traes_3DS_247FA5037 Triticum aestivum Traes_3DS_247FA5037 I 0.849
Traes_4AS_D95D10893 Triticum aestivum Traes_4AS_D95D10893 I 0.849
Traes_4BL_FD0D3B74A Triticum aestivum Traes_4BL_FD0D3B74A I 0.849
Traes_4DL_DA70DBAFC Triticum aestivum Traes_4DL_DA70DBAFC I 0.849
TRIUR3_13265 Triticum urartu TRIUR3_13265 I 0.849
VIT_07s0141g01060 Vitis vinifera VIT_07s0141g01060 I 0.849
VIT_15s0046g00320 Vitis vinifera VIT_15s0046g00320 I 0.849
Ca_01324 Cicer arietinum Ca_01324 I 0.849
Ca_12209 Cicer arietinum Ca_12209 I 0.849
Ca_17639 Cicer arietinum Ca_17639 I 0.849
Cla006102 Citrullus lanatus Cla006102 I 0.849
Cla021464 Citrullus lanatus Cla021464 I 0.849
Pm018355 Prunus mume Pm018355 I 0.849
Pm020642 Prunus mume Pm020642 I 0.849
29742.m001404 Ricinus communis 29742.m001404 I 0.849
29883.m002023 Ricinus communis 29883.m002023 I 0.849
cassava32975.m1 Manihot esculenta cassava32975.m1 I 0.849
cassava36709.valid.m1 Manihot esculenta cassava36709.valid.m1 I 0.849
cassava46510.m1 Manihot esculenta cassava46510.m1 I 0.849
Cucsa.053540 Cucumis sativus Cucsa.053540 I 0.849
Cucsa.259300 Cucumis sativus Cucsa.259300 I 0.849
mgf001638m Mimulus guttatus mgf001638m I 0.849
mgf011621m Mimulus guttatus mgf011621m I 0.849
mgf018623m Mimulus guttatus mgf018623m I 0.849
mgf022967m Mimulus guttatus mgf022967m I 0.849
mgf023325m Mimulus guttatus mgf023325m I 0.849
Aquca_014_00031 Aquilegia coerulea Aquca_014_00031 I 0.849
Bostr.25993s0115 Boechera stricta Bostr.25993s0115 I 0.849
Cagra.0050s0048 Capsella grandiflora Cagra.0050s0048 I 0.849
Carubv10025360m.g Capsella rubella Carubv10025360m.g I 0.849
Ciclev10019339m.g Citrus clementina Ciclev10019339m.g I 0.849
Ciclev10019816m.g Citrus clementina Ciclev10019816m.g I 0.849
Eucgr.E00047 Eucalyptus grandis Eucgr.E00047 I 0.849
Eucgr.H02391 Eucalyptus grandis Eucgr.H02391 I 0.849
Eucgr.K03293 Eucalyptus grandis Eucgr.K03293 I 0.849
evm.TU.contig_45808 Carica papaya evm.TU.contig_45808 I 0.849
gene08231-v1.0-hybrid Fragaria vesca gene08231-v1.0-hybrid I 0.849
gene19143-v1.0-hybrid Fragaria vesca gene19143-v1.0-hybrid I 0.849
Gorai.007G109300 Gossypium raimondii Gorai.007G109300 I 0.849
Gorai.007G143800 Gossypium raimondii Gorai.007G143800 I 0.849
Lus10005966.g Linum usitatissimum Lus10005966.g I 0.849
Lus10030243.g Linum usitatissimum Lus10030243.g I 0.849
MDP0000226497 Malus domestica MDP0000226497 I 0.849
MDP0000229725 Malus domestica MDP0000229725 I 0.849
MDP0000279087 Malus domestica MDP0000279087 I 0.849
MDP0000386580 Malus domestica MDP0000386580 I 0.849
MDP0000401086 Malus domestica MDP0000401086 I 0.849
MDP0000406270 Malus domestica MDP0000406270 I 0.849
orange1.1g010728m.g Citrus sinensis orange1.1g010728m.g I 0.849
orange1.1g048817m.g Citrus sinensis orange1.1g048817m.g I 0.849
Pavir.Ea00030 Panicum virgatum Pavir.Ea00030 I 0.849
Pavir.Eb00041 Panicum virgatum Pavir.Eb00041 I 0.849
SapurV1A.0003s1040 Salix purpurea SapurV1A.0003s1040 I 0.849
SapurV1A.0006s1070 Salix purpurea SapurV1A.0006s1070 I 0.849
SapurV1A.0013s0270 Salix purpurea SapurV1A.0013s0270 I 0.849
SapurV1A.0013s0280 Salix purpurea SapurV1A.0013s0280 I 0.849
SapurV1A.0378s0120 Salix purpurea SapurV1A.0378s0120 I 0.849
Thhalv10001374m.g Eutrema salsugineum Thhalv10001374m.g I 0.849
PK00939.1 Cannabis sativa PK00939.1 I 0.849
PK29179.1 Cannabis sativa PK29179.1 I 0.849
chr1.CM0375.280.nd Lotus japonicus chr1.CM0375.280.nd I 0.849
Ca_00186 Cicer arietinum Ca_00186 I 0.847
Cla014287 Citrullus lanatus Cla014287 I 0.847
Cucsa.103620 Cucumis sativus Cucsa.103620 I 0.847
e_gw1.11.52.1 Physcomitrella patens e_gw1.11.52.1 I 0.846
Lus10011578.g Linum usitatissimum Lus10011578.g I 0.846
Lus10018787.g Linum usitatissimum Lus10018787.g I 0.846
Lus10024871.g Linum usitatissimum Lus10024871.g I 0.846
Bra013128 Brassica rapa Bra013128 I 0.845
MTR_5g014640 Medicago truncatula MTR_5g014640 I 0.844
Bostr.25542s0234 Boechera stricta Bostr.25542s0234 I 0.844
Lus10019247.g Linum usitatissimum Lus10019247.g I 0.844
POPTR_0007s14480 Populus trichocarpa POPTR_0007s14480 I 0.843
GLYMA01G40611 Glycine max GLYMA01G40611 I 0.842
GLYMA08G06831 Glycine max GLYMA08G06831 I 0.842
GSMUA_Achr3G30620_001 Musa acuminata GSMUA_Achr3G30620_001 I 0.842
MTR_5g014600 Medicago truncatula MTR_5g014600 I 0.842
GLYMA11G04681 Glycine max GLYMA11G04681 I 0.840
Eucgr.H02398 Eucalyptus grandis Eucgr.H02398 I 0.840
Cla014288 Citrullus lanatus Cla014288 I 0.839
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.838