chr2.CM0021.430.nc (Lotus japonicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 chr2.CM0021.430.nc T052024_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.862 0.760
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0021.430.nc bHLH 175 224

Links

Other bHLH family TFs
Other Lotus japonicus TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000124672 Malus domestica MDP0000124672 I 0.895
Pavir.J27306 Panicum virgatum Pavir.J27306 I 0.895
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.879
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.879
Ca_22309 Cicer arietinum Ca_22309 I 0.874
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.866
GLYMA01G40600 Glycine max GLYMA01G40600 I 0.864
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.863
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.863
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.862
Bo4g150960 Brassica oleracea Bo4g150960 I 0.862
Bra030210 Brassica rapa Bra030210 I 0.862
Bra039924 Brassica rapa Bra039924 I 0.862
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.862
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.862
TCM_000894 Theobroma cacao TCM_000894 I 0.862
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.862
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.862
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.862
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.862
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.862
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.862
MDP0000159571 Malus domestica MDP0000159571 I 0.862
MDP0000170202 Malus domestica MDP0000170202 I 0.862
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.862
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.862
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.860
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.860
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.860
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.860
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.860
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.860
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.860
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.860
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.860
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.860
OBART03G32580 Oryza barthii OBART03G32580 I 0.860
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.860
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.860
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.860
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.860
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.860
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.860
OS03G0725800 Oryza sativa OS03G0725800 I 0.860
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.860
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.860
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.860
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.860
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.860
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.860
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.860
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.860
Si036393m.g Setaria italica Si036393m.g I 0.860
TCM_000895 Theobroma cacao TCM_000895 I 0.860
TCM_006357 Theobroma cacao TCM_006357 I 0.860
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.860
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.860
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.860
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.860
Cla000123 Citrullus lanatus Cla000123 I 0.860
Pm002305 Prunus mume Pm002305 I 0.860
Pm021008 Prunus mume Pm021008 I 0.860
28179.m000478 Ricinus communis 28179.m000478 I 0.860
28179.m000479 Ricinus communis 28179.m000479 I 0.860
29804.m001498 Ricinus communis 29804.m001498 I 0.860
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.860
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.860
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.860
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.860
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.860
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.860
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.860
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.860
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.860
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.860
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.860
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.860
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.860
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.860
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.860
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.860
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.860
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.860
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.860
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.860
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.860
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.860
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.860
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.860
MDP0000174149 Malus domestica MDP0000174149 I 0.860
MDP0000291132 Malus domestica MDP0000291132 I 0.860
MDP0000318216 Malus domestica MDP0000318216 I 0.860
MDP0000502440 Malus domestica MDP0000502440 I 0.860
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.860
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.860
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.860
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.860
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.860
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.860
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.860
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.860
PK09122.1 Cannabis sativa PK09122.1 I 0.860
PK11573.1 Cannabis sativa PK11573.1 I 0.860
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.860
GLYMA07G13406 Glycine max GLYMA07G13406 N 0.857
Ca_02263 Cicer arietinum Ca_02263 I 0.854
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I 0.852
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I 0.851
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.850
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.850
Ca_02264 Cicer arietinum Ca_02264 I 0.850
BHLH25 Arabidopsis thaliana AT4G37850 I 0.848
Bo1g003350 Brassica oleracea Bo1g003350 I 0.848
Bo3g153150 Brassica oleracea Bo3g153150 I 0.848
Bra010617 Brassica rapa Bra010617 I 0.848
Bra011790 Brassica rapa Bra011790 I 0.848
GSMUA_Achr8G05170_001 Musa acuminata GSMUA_Achr8G05170_001 I 0.848
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I 0.848
Carubv10006834m.g Capsella rubella Carubv10006834m.g I 0.848
Lus10039640.g Linum usitatissimum Lus10039640.g I 0.848
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I 0.848
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.842
Lus10019247.g Linum usitatissimum Lus10019247.g I 0.842
Cla014288 Citrullus lanatus Cla014288 I 0.841
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.839
F775_11371 Aegilops tauschii F775_11371 I 0.839
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.839
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.839
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.839
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.839
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.839
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.839
Pm002304 Prunus mume Pm002304 I 0.839
Lus10011578.g Linum usitatissimum Lus10011578.g I 0.839
Bra013128 Brassica rapa Bra013128 I 0.838
Eucgr.H02398 Eucalyptus grandis Eucgr.H02398 I 0.838
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.838