Pavir.J29021 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J29021 T050925_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.826 1.000
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.826 1.000
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.826 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J29021.1.p bHLH 404 441

Links

Other bHLH family TFs
Other Panicum virgatum TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.000
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.000
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.000
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.000
orange1.1g026312m.g Citrus sinensis orange1.1g026312m.g N 0.000
MDP0000168614 Malus domestica MDP0000168614 N 0.000
Lus10035067.g Linum usitatissimum Lus10035067.g N 0.000
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.000
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.000
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.000
Carubv10020880m.g Capsella rubella Carubv10020880m.g N 0.000
Cagra.0147s0016 Capsella grandiflora Cagra.0147s0016 N 0.000
WHY2 Arabidopsis thaliana AT1G71260 N 0.000
mgf015710m Mimulus guttatus mgf015710m N 0.000
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.000
Pm022821 Prunus mume Pm022821 N 0.000
TCM_035992 Theobroma cacao TCM_035992 N 0.000
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.000
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.000
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.000
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.000
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.000
GLYMA03G41270 Glycine max GLYMA03G41270 N 0.000