Carubv10020880m.g (Capsella rubella)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Carubv10020880m.g T350621_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020880m Whirly 58 193
Carubv10020881m Whirly 57 192

Links

Other Whirly family TFs
Other Capsella rubella TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0147s0016 Capsella grandiflora Cagra.0147s0016 N 0.993
WHY2 Arabidopsis thaliana AT1G71260 N 0.926
ATWHY2 Arabidopsis lyrata scaffold_202038.1 N 0.926
Thhalv10019058m.g Eutrema salsugineum Thhalv10019058m.g N 0.904
Bostr.10273s0220 Boechera stricta Bostr.10273s0220 N 0.882
SapurV1A.0002s0060 Salix purpurea SapurV1A.0002s0060 N 0.809
ATWHY2 Populus trichocarpa POPTR_0003s04700 N 0.795
Bra016150 Brassica rapa Bra016150 N 0.794
Lus10035067.g Linum usitatissimum Lus10035067.g N 0.787
Bo6g112840 Brassica oleracea Bo6g112840 N 0.787
Lus10017892.g Linum usitatissimum Lus10017892.g N 0.779
mgf015710m Mimulus guttatus mgf015710m N 0.772
MDP0000168614 Malus domestica MDP0000168614 N 0.765
Solyc11g044750.1 Solanum lycopersicum Solyc11g044750.1 N 0.765
PGSC0003DMG400022930 Solanum tuberosum PGSC0003DMG400022930 N 0.757
evm.TU.supercontig_249.9 Carica papaya evm.TU.supercontig_249.9 N 0.757
Eucgr.K01091 Eucalyptus grandis Eucgr.K01091 N 0.750
MLOC_19666 Hordeum vulgare MLOC_19666 N 0.750
Pm022821 Prunus mume Pm022821 N 0.743
PRUPE_ppa011529mg Prunus persica PRUPE_ppa011529mg N 0.743
MTR_7g116270 Medicago truncatula MTR_7g116270 N 0.739
chr1.LjT14G19.90.nc Lotus japonicus chr1.LjT14G19.90.nc N 0.728
cassava24783.valid.m1 Manihot esculenta cassava24783.valid.m1 N 0.728
GLYMA19G43880 Glycine max GLYMA19G43880 N 0.724
orange1.1g026312m.g Citrus sinensis orange1.1g026312m.g N 0.724
TCM_035992 Theobroma cacao TCM_035992 N 0.721
Gorai.004G266000 Gossypium raimondii Gorai.004G266000 N 0.706