CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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atf-7
(
Caenorhabditis elegans
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
WBGene00000223
T069396_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
atf-7
M00595_2.00
Caenorhabditis elegans
NRTGACGTVN
NBACGTCAYN
PBM
Narasimhan et al.(2015)
pTH9314
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG18054
M01141_2.00
Caenorhabditis briggsae
NRTGACGTSA
TSACGTCAYN
PBM
Lambert et al.(2019)
pTH11475
0.833
0.746
For this family, TFs with SR scores >
0.782
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00595_2.00
bZIP
52
113
PDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLTQNQVLRRELERVTALL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C07G2.2a
bZIP
341
402
PDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLTQNQVLRRELERVTALL
C07G2.2b
bZIP
341
407
PDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLAIQTQNQVLRRELERVTALLTE
C07G2.2c.1
bZIP
390
456
PDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLAIQTQNQVLRRELERVTALLTE
C07G2.2c.2
bZIP
390
456
PDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLAIQTQNQVLRRELERVTALLTE
C07G2.2d.1
bZIP
322
372
PDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLVRNEIL
C07G2.2d.2
bZIP
322
372
PDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLVRNEIL
Links
Other
bZIP
family TFs
Other
Caenorhabditis elegans
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy