Cagra.0993s0063 (Capsella grandiflora)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Cagra.0993s0063 T071477_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BZIP16
M06764_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_colamp_a 		0.893 0.969
BZIP16
M06765_2.00 		Arabidopsis thaliana
DDWKVHSACGTGGCA
TGCCACGTSDBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_col_v3a 		0.893 0.969
BZIP68
M01770_2.00 		Arabidopsis thaliana
BMCASGBND
HNVCSTGKV		 PBM
Weirauch et al.(2014)
pTH8192 		0.858 0.875
BZIP68
M06752_2.00 		Arabidopsis thaliana
DNWKNHSACGTGGCR
YGCCACGTSDNMWNH		 Dap-seq
OMalley et al.(2016)
bZIP68_col_a 		0.858 0.875
PK23964.1
M01160_2.00 		Cannabis sativa
DNKMCACGTV
BACGTGKMNH		 PBM
Lambert et al.(2019)
pTH10151 		0.857 0.734
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.849 0.656
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.849 0.656
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.849 0.656
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.849 0.656
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.849 0.656
TAF1_TOBAC
M10079_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_01 		0.808 0.641
TAF1_TOBAC
M10080_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_Q2 		0.808 0.641
EmBP-1
M02659_2.00 		Triticum aestivum
CCACGTSW
WSACGTGG		 SELEX
Mathelier et al.(2014)
MA0128.1 		0.803 0.609
EMBP1_WHEAT
M09921_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EMBP1_02 		0.803 0.609
EMBP1_WHEAT
M09922_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EMBP1_Q2 		0.803 0.609
Q40645_ORYSA
M10050_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OSBZ8_Q6 		0.801 0.625
Q41109_PHAVU
M10078_2.00 		Phaseolus vulgaris Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ROM_Q2 		0.801 0.609
PK09653.1
M01156_2.00 		Cannabis sativa
NNMCASVNNN
NNNBSTGKNN		 PBM
Lambert et al.(2019)
pTH10114 		0.792 0.641
GBF2
M01781_2.00 		Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV		 PBM
Weirauch et al.(2014)
pTH7258 		0.791 0.516
CPRF3_PETCR
M10071_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF3_01 		0.790 0.594
CPRF3_PETCR
M10072_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF3_Q2 		0.790 0.594
CPRF1_PETCR
M10066_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_01 		0.788 0.625
CPRF1_PETCR
M10067_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_Q2 		0.788 0.625
CPRF1_PETCR
M10068_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF_Q2 		0.788 0.625
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0993s0063.1.p bZIP 301 370
Cagra.0993s0063.2.p bZIP 301 370

Links

Other bZIP family TFs
Other Capsella grandiflora TFs

306 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I
AMTR_s00001p00218870 Amborella trichopoda AMTR_s00001p00218870 I
Cla002664 Citrullus lanatus Cla002664 I
Cucsa.392160 Cucumis sativus Cucsa.392160 I
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I
mgf006616m Mimulus guttatus mgf006616m I
Eucgr.K02711 Eucalyptus grandis Eucgr.K02711 I
Gorai.007G043400 Gossypium raimondii Gorai.007G043400 I
Lus10004638.g Linum usitatissimum Lus10004638.g I
Lus10026678.g Linum usitatissimum Lus10026678.g I
PK10594.1 Cannabis sativa PK10594.1 I
GLYMA16G32540 Glycine max GLYMA16G32540 I
GLYMA09G27461 Glycine max GLYMA09G27461 I
GLYMA05G28130 Glycine max GLYMA05G28130 I
PK19764.1 Cannabis sativa PK19764.1 I
Pavir.Ea02667 Panicum virgatum Pavir.Ea02667 N
Pavir.Eb02653 Panicum virgatum Pavir.Eb02653 N
PDK_20s13009472g001 Phoenix dactylifera PDK_20s13009472g001 N
MADS32 Oryza sativa OS01G0726400 N
TRAES3BF048900050CFD_g Triticum aestivum TRAES3BF048900050CFD_g N
Traes_3AL_219064574 Triticum aestivum Traes_3AL_219064574 N
Si002988m.g Setaria italica Si002988m.g N
Sb03g033380 Sorghum bicolor Sb03g033380 N
ORUFI01G32600 Oryza rufipogon ORUFI01G32600 N
ORGLA01G0242900 Oryza glaberrima ORGLA01G0242900 N
OPUNC01G29290 Oryza punctata OPUNC01G29290 N
ONIVA01G33710 Oryza nivara ONIVA01G33710 N
OGLUM01G33550 Oryza glumaepatula OGLUM01G33550 N
OBART01G29490 Oryza barthii OBART01G29490 N
OB01G38450 Oryza brachyantha OB01G38450 N
MLOC_80902 Hordeum vulgare MLOC_80902 N
LPERR01G25340 Leersia perrieri LPERR01G25340 N
GRMZM2G079727 Zea mays GRMZM2G079727 N
GRMZM2G001139 Zea mays GRMZM2G001139 N
F775_28377 Aegilops tauschii F775_28377 N
BRADI2G48690 Brachypodium distachyon BRADI2G48690 N
BGIOSGA000892 Oryza indica BGIOSGA000892 N