VDBG_06048 (Verticillium albo atrum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 VDBG_06048 T078396_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU07952
M01890_2.00 		Neurospora crassa
YWNMGCCHY
RDGGCKNWR		 PBM
Weirauch et al.(2014)
pTH9003 		0.788 0.912
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VDBG_06048T0 C2H2 ZF 139 161
VDBG_06048T0 C2H2 ZF 167 189
VDBG_06048T0 C2H2 ZF 195 225

Links

Other C2H2 ZF family TFs
Other Verticillium albo atrum TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA021177 Oryza indica BGIOSGA021177 N
OGLUM06G17330 Oryza glumaepatula OGLUM06G17330 N
OMERI06G17270 Oryza meridionalis OMERI06G17270 N
ONIVA06G19160 Oryza nivara ONIVA06G19160 N
OPUNC06G14740 Oryza punctata OPUNC06G14740 N
ORGLA06G0135300 Oryza glaberrima ORGLA06G0135300 N
ORUFI06G17190 Oryza rufipogon ORUFI06G17190 N